Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.5e-228 795.0 392 100.0
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.2e-222 776.2 393 97.7
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 1.0e-205 719.9 393 90.1
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 2.9e-200 701.8 393 87.8
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 1.3e-192 676.4 393 84.2
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 5.5e-191 671.0 393 83.7
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 4.7e-190 667.9 393 82.7
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 4.7e-190 667.9 393 83.0
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 4.0e-189 664.8 393 83.2
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 5.7e-188 661.0 406 79.6
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.7e-187 659.4 396 82.1
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 7.0e-186 654.1 404 79.5
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 7.0e-186 654.1 398 81.4
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.7e-185 652.1 403 78.9
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 2.9e-184 648.7 401 79.6
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 3.8e-184 648.3 398 78.9
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 3.8e-184 648.3 401 80.0
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 1.5e-183 646.4 403 78.2
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.3e-181 639.0 401 79.3
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.0e-181 638.6 401 79.1
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 2.0e-180 636.0 393 79.4
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 5.7e-180 634.4 400 76.8
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.7e-179 632.9 404 77.2
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 2.2e-179 632.5 412 76.9
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 2.4e-178 629.0 393 79.6
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 7.0e-178 627.5 427 74.7
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 9.2e-178 627.1 393 77.9
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.2e-177 626.7 385 79.7
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 2.3e-176 622.5 401 75.6
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 2.9e-176 622.1 406 75.4
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 6.6e-176 620.9 394 75.9
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.5e-175 619.8 394 75.6
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.5e-175 619.8 393 76.6
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 3.3e-175 618.6 397 76.8
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 4.3e-175 618.2 399 76.7
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 7.3e-175 617.5 401 74.1
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 9.5e-175 617.1 394 75.6
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 9.5e-175 617.1 405 75.1
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 2.8e-174 615.5 393 75.3
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 3.6e-174 615.1 394 74.4
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 8.0e-174 614.0 395 74.9
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 1.0e-173 613.6 398 76.4
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.4e-173 613.2 399 75.4
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.8e-173 612.8 393 75.8
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 5.2e-173 611.3 404 74.8
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 6.8e-173 610.9 394 75.4
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 8.9e-173 610.5 394 73.9
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 1.5e-172 609.8 396 75.3
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 3.4e-172 608.6 372 77.2
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 7.5e-172 607.4 393 75.8
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.3e-171 606.7 401 74.1
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 1.3e-171 606.7 404 73.8
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 1.3e-171 606.7 397 75.1
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 3.7e-171 605.1 396 75.0
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 1.1e-170 603.6 352 81.8
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.8e-170 602.8 345 82.0
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 2.4e-170 602.4 391 74.9
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 4.1e-170 601.7 393 74.0
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 5.4e-170 601.3 405 73.6
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 9.2e-170 600.5 404 73.5
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.6e-169 599.7 385 75.8
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.6e-169 599.7 385 75.8
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 4.6e-169 598.2 392 74.7
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 4.6e-169 598.2 403 72.2
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.0e-168 597.0 372 79.6
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 3.0e-168 595.5 400 73.8
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 3.0e-168 595.5 392 73.7
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 3.9e-168 595.1 385 75.3
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.1e-167 593.6 405 75.1
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.5e-167 593.2 404 73.5
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.9e-167 592.8 392 73.7
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 3.3e-167 592.0 359 78.8
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 5.6e-167 591.3 366 78.4
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 7.3e-167 590.9 391 76.7
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 7.3e-167 590.9 405 74.3
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 1.2e-166 590.1 405 75.1
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.2e-166 590.1 405 74.1
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 8.9e-165 583.9 401 71.3
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 7.5e-164 580.9 399 74.7
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 1.3e-163 580.1 352 79.5
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 6.4e-163 577.8 402 71.1
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 8.3e-163 577.4 420 68.3
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 8.3e-163 577.4 380 73.4
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 4.1e-162 575.1 414 70.5
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.7e-161 572.4 366 78.4
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 3.5e-161 572.0 402 72.9
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 1.0e-160 570.5 396 72.2
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 6.6e-160 567.8 326 82.5
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.3e-159 565.5 376 76.1
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 2.8e-158 562.4 402 69.9
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.4e-157 560.1 352 77.6
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 3.1e-157 558.9 376 75.5
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.2e-156 557.0 405 71.6
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 1.5e-156 556.6 313 82.7
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 9.8e-156 553.9 354 75.4
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.3e-155 553.5 435 66.4
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 4.9e-155 551.6 348 76.4
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 4.1e-154 548.5 352 75.9
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 7.1e-154 547.7 393 69.2
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 3.0e-152 542.3 424 65.6
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 1.1e-151 540.4 349 73.1
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.9e-151 539.7 384 69.3
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 5.6e-151 538.1 383 69.7
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.2e-150 537.0 380 69.7
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.6e-150 536.6 398 70.6
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 6.2e-150 534.6 381 69.3
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 6.2e-150 534.6 355 73.2
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 1.8e-149 533.1 352 72.4
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 3.1e-149 532.3 400 66.5
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 5.2e-149 531.6 313 80.8
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.4e-146 523.5 467 59.7
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 6.6e-144 514.6 342 70.8
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.1e-143 513.8 397 66.5
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.9e-143 513.1 572 49.8
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 4.8e-134 481.9 291 79.0
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 9.0e-133 477.6 343 67.1
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 5.1e-128 461.8 386 64.2
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.9e-127 459.9 345 64.9
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 1.2e-121 440.7 329 67.8
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 7.0e-77 292.0 193 74.1
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 3.4e-71 273.1 372 44.9
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 4.1e-69 266.2 147 83.0
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 3.1e-61 240.0 198 59.1
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 5.6e-58 229.2 301 47.5
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 2.6e-55 220.3 189 61.4
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 3.5e-52 209.9 139 73.4
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 4.6e-44 183.0 111 78.4
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 9.9e-39 165.2 111 71.2
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 4.0e-32 143.3 81 80.2
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 8.9e-32 142.1 350 28.9
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.1e-29 135.2 99 69.7
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 8.1e-25 119.0 66 78.8
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.6e-17 94.7 53 81.1
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 9.3e-13 79.0 132 38.6
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 8.7e-11 72.4 65 58.5
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.5e-10 71.6 45 73.3
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 8.4e-06 55.8 69 49.3


User provided reference genes

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