Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01870 Corylus avellana HOM05D000141 ORTHO05D019499 5.1e-54 214.2 108 100.0
Haze_10545 Corylus avellana HOM05D000141 ORTHO05D019499 4.0e-51 204.5 108 95.4
Haze_00135 Corylus avellana HOM05D000141 ORTHO05D019499 1.4e-35 152.9 110 77.3
Haze_20323 Corylus avellana HOM05D000141 ORTHO05D019499 1.9e-24 115.9 76 78.9
Haze_20456 Corylus avellana HOM05D000141 ORTHO05D019499 5.5e-24 114.4 76 78.9
MD06G1083300 Malus domestica HOM05D000141 ORTHO05D001860 3.9e-14 81.6 59 69.5
MD14G1105100 Malus domestica HOM05D000141 ORTHO05D001860 6.7e-14 80.9 59 69.5
SGA_v2.0_scaffold173G39185 Striga asiatica HOM05D000141 ORTHO05D001860 1.5e-13 79.7 45 80.0
Nitab4.5_0001615g0170 Nicotiana tabacum HOM05D000141 ORTHO05D001860 4.4e-13 78.2 60 68.3
Nitab4.5_0013184g0030 Nicotiana tabacum HOM05D000141 ORTHO05D001860 4.4e-13 78.2 60 68.3
QL12p032934 Quercus lobata HOM05D000141 ORTHO05D001860 1.7e-12 76.3 45 80.0
Sopen08g029420 Solanum pennellii HOM05D000141 ORTHO05D001860 1.7e-12 76.3 45 80.0
PGSC0003DMG400012206 Solanum tuberosum HOM05D000141 ORTHO05D001860 1.7e-12 76.3 45 80.0
CAN.G774.46 Capsicum annuum HOM05D000141 ORTHO05D001860 2.2e-12 75.9 45 80.0
Cfa012227 Carpinus fangiana HOM05D000141 ORTHO05D001860 2.2e-12 75.9 38 94.7
Lj8A221T68 Lonicera japonica HOM05D000141 ORTHO05D001860 2.2e-12 75.9 43 83.7
MBI04_g06594_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001860 2.8e-12 75.5 45 80.0
Sabra03G0091000 Salix brachista HOM05D000141 ORTHO05D001860 3.7e-12 75.1 68 64.7
HanXRQChr13g0394261 Helianthus annuus HOM05D000141 ORTHO05D001860 6.3e-12 74.3 45 73.3
SGA_v2.0_scaffold96G28934 Striga asiatica HOM05D000141 ORTHO05D001860 6.3e-12 74.3 45 75.6
Medtr8g098230 Medicago truncatula HOM05D000141 ORTHO05D001860 8.2e-12 73.9 83 50.6
VMungo0251G0114 Vigna mungo HOM05D000141 ORTHO05D001860 8.2e-12 73.9 48 75.0
Ca_17531_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001860 1.1e-11 73.6 48 75.0
Lsat_1_v5_gn_6_6561 Lactuca sativa HOM05D000141 ORTHO05D001860 1.1e-11 73.6 56 67.9
TPR.G12809 Trifolium pratense HOM05D000141 ORTHO05D001860 1.4e-11 73.2 51 70.6
Aqoxy7G00325 Aquilegia oxysepala HOM05D000141 ORTHO05D001860 4.1e-11 71.6 56 64.3
Hma1.2p1_0377F.1_g139280 Hydrangea macrophylla HOM05D000141 ORTHO05D001860 4.1e-11 71.6 38 89.5
EL10Ac5g13063 Beta vulgaris HOM05D000141 ORTHO05D001860 5.3e-11 71.2 60 60.0
BcaB06g27610 Brassica carinata HOM05D000141 ORTHO05D001860 5.3e-11 71.2 45 75.6
BolC9t54765H Brassica oleracea HOM05D000141 ORTHO05D001860 5.3e-11 71.2 47 72.3
FAN13G3278 Fragaria x ananassa HOM05D000141 ORTHO05D001860 5.3e-11 71.2 42 81.0
Sp7g00640 Schrenkiella parvula HOM05D000141 ORTHO05D001860 5.3e-11 71.2 57 63.2
SpUn0010_0120 Schrenkiella parvula HOM05D000141 ORTHO05D001860 5.3e-11 71.2 57 63.2
TWI60G1186 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 5.3e-11 71.2 38 84.2
CiPaw.11G135100 Carya illinoinensis HOM05D000141 ORTHO05D001860 7.0e-11 70.9 38 86.8
CiPaw.12G093000 Carya illinoinensis HOM05D000141 ORTHO05D001860 7.0e-11 70.9 38 86.8
TWI15G0349 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 7.0e-11 70.9 38 86.8
ECA233G1024 Erigeron canadensis HOM05D000141 ORTHO05D001860 1.6e-10 69.7 38 84.2
MSTRG.1864 Avicennia marina HOM05D000141 ORTHO05D001860 2.0e-10 69.3 38 84.2
FAN08G1054 Fragaria x ananassa HOM05D000141 ORTHO05D001860 2.0e-10 69.3 42 78.6
Ah.12g056890 Amaranthus hybridus HOM05D000141 ORTHO05D001860 2.6e-10 68.9 38 84.2
MSTRG.11983 Avicennia marina HOM05D000141 ORTHO05D001860 2.6e-10 68.9 38 84.2
Duzib084G0842 Durio zibethinus HOM05D000141 ORTHO05D001860 2.6e-10 68.9 38 86.8
Gohir.A03G016500 Gossypium hirsutum HOM05D000141 ORTHO05D001860 2.6e-10 68.9 38 86.8
Gohir.D03G151400 Gossypium hirsutum HOM05D000141 ORTHO05D001860 2.6e-10 68.9 38 86.8
Gorai.003G158800 Gossypium raimondii HOM05D000141 ORTHO05D001860 2.6e-10 68.9 38 86.8
Thecc.03G278900 Theobroma cacao HOM05D000141 ORTHO05D001860 2.6e-10 68.9 38 86.8
Duzib205G0527 Durio zibethinus HOM05D000141 ORTHO05D001860 4.5e-10 68.2 38 86.8
Prupe.5G100400 Prunus persica HOM05D000141 ORTHO05D001860 5.9e-10 67.8 38 84.2
Migut.A00761 Erythranthe guttata HOM05D000141 ORTHO05D001860 7.7e-10 67.4 38 78.9
DCAR_000615 Daucus carota HOM05D000449 ORTHO05D000360 1.0e-09 67.0 36 86.1
CANSAT21G0110 Cannabis sativa HOM05D000141 ORTHO05D001860 1.7e-09 66.2 38 81.6
CANSAT21G1366 Cannabis sativa HOM05D000141 ORTHO05D001860 1.7e-09 66.2 38 81.6
Lj4g0003055 Lotus japonicus HOM05D000141 ORTHO05D001860 1.7e-09 66.2 44 75.0
Potri.003G127800 Populus trichocarpa HOM05D000141 ORTHO05D001860 1.7e-09 66.2 45 75.6
Rhsim07G0090500 Rhododendron simsii HOM05D000141 ORTHO05D001860 1.7e-09 66.2 38 81.6
Actinidia39829 Actinidia chinensis HOM05D000141 ORTHO05D001860 2.2e-09 65.9 45 71.1
Nn5g28325 Nelumbo nucifera HOM05D000141 ORTHO05D001860 2.9e-09 65.5 38 78.9
Sed0014958 Sechium edule HOM05D000141 ORTHO05D001860 2.9e-09 65.5 38 78.9
Sc01g0009580 Simmondsia chinensis HOM05D000141 ORTHO05D001860 2.9e-09 65.5 38 81.6
Lj9C426T14 Lonicera japonica HOM05D000141 ORTHO05D001860 3.8e-09 65.1 69 52.2
Solyc06g069130.4 Solanum lycopersicum HOM05D000141 ORTHO05D001860 3.8e-09 65.1 54 63.0
Glyma.05G208100 Glycine max HOM05D000141 ORTHO05D001860 5.0e-09 64.7 44 72.7
MD14G1226600 Malus domestica HOM05D000141 ORTHO05D001860 5.0e-09 64.7 45 68.9
AL7G48150 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 6.5e-09 64.3 38 81.6
Potri.001G104000 Populus trichocarpa HOM05D000141 ORTHO05D001860 6.5e-09 64.3 38 81.6
MELO3C005678.2 Cucumis melo HOM05D000141 ORTHO05D001860 8.5e-09 63.9 38 78.9
CsaV3_5G002790 Cucumis sativus L. HOM05D000141 ORTHO05D001860 8.5e-09 63.9 38 78.9
Sp2g01030 Schrenkiella parvula HOM05D000141 ORTHO05D001860 8.5e-09 63.9 38 81.6
CSS0028635 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 1.1e-08 63.5 38 76.3
CSS0047289 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 1.1e-08 63.5 38 76.3
Gohir.A12G228300 Gossypium hirsutum HOM05D000141 ORTHO05D001860 1.1e-08 63.5 38 78.9
Manes.01G060600 Manihot esculenta HOM05D000141 ORTHO05D001860 1.1e-08 63.5 38 78.9
AL2G11600 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 1.5e-08 63.2 38 81.6
AT1G63640 Arabidopsis thaliana HOM05D000141 ORTHO05D001860 1.5e-08 63.2 38 81.6
Carub.0002s0122 Capsella rubella HOM05D000141 ORTHO05D001860 1.5e-08 63.2 38 81.6
CARHR047700 Cardamine hirsuta HOM05D000141 ORTHO05D001860 1.5e-08 63.2 38 81.6
Eucgr.D01842 Eucalyptus grandis HOM05D000141 ORTHO05D001860 1.5e-08 63.2 38 78.9
Manes.02G021900 Manihot esculenta HOM05D000141 ORTHO05D001860 1.5e-08 63.2 38 78.9
Sopen06g026410 Solanum pennellii HOM05D000141 ORTHO05D001860 1.5e-08 63.2 54 61.1
CSS0009908 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D001860 1.9e-08 62.8 48 60.4
Ciclev10018623m.g Citrus clementina HOM05D000141 ORTHO05D001860 1.9e-08 62.8 44 72.7
Phvul.002G289700 Phaseolus vulgaris HOM05D000141 ORTHO05D001860 1.9e-08 62.8 44 70.5
BcaB07g31406 Brassica carinata HOM05D000141 ORTHO05D001860 2.5e-08 62.4 37 81.1
Ca_25493_v3 Cicer arietinum L. HOM05D000141 ORTHO05D001860 2.5e-08 62.4 48 66.7
Thhalv10027628m.g Eutrema salsugineum HOM05D000141 ORTHO05D001860 2.5e-08 62.4 38 81.6
FvH4_5g02480 Fragaria vesca HOM05D000141 ORTHO05D001860 2.5e-08 62.4 38 78.9
FAN18G1325 Fragaria x ananassa HOM05D000141 ORTHO05D001860 2.5e-08 62.4 38 78.9
Glyma.08G014800 Glycine max HOM05D000141 ORTHO05D001860 2.5e-08 62.4 44 70.5
Nn3g18610 Nelumbo nucifera HOM05D000141 ORTHO05D001860 2.5e-08 62.4 44 68.2
PSO478G1443 Papaver somniferum HOM05D000141 ORTHO05D001860 2.5e-08 62.4 38 76.3
PSO782G3574 Papaver somniferum HOM05D000141 ORTHO05D001860 2.5e-08 62.4 38 76.3
Actinidia27381 Actinidia chinensis HOM05D000141 ORTHO05D001860 3.2e-08 62.0 38 76.3
BcaB07g31560 Brassica carinata HOM05D000141 ORTHO05D001860 3.2e-08 62.0 37 78.4
BcaC04g22495 Brassica carinata HOM05D000141 ORTHO05D001860 3.2e-08 62.0 37 81.1
BcaC04g22695 Brassica carinata HOM05D000141 ORTHO05D001860 3.2e-08 62.0 37 78.4
BraA09t37030Z Brassica rapa HOM05D000141 ORTHO05D001860 3.2e-08 62.0 37 78.4
Psat7g033040 Pisum sativum HOM05D000141 ORTHO05D001860 3.2e-08 62.0 44 70.5
Sed0006706 Sechium edule HOM05D000141 ORTHO05D001860 3.2e-08 62.0 38 73.7
THA.LOC104809394 Tarenaya hassleriana HOM05D000141 ORTHO05D001860 4.2e-08 61.6 38 78.9
TWI60G0408 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 4.2e-08 61.6 44 68.2
Actinidia19835 Actinidia chinensis HOM05D000141 ORTHO05D019499 5.5e-08 61.2 45 66.7
Aa31LG7G3080 Aethionema arabicum HOM05D000141 ORTHO05D001860 5.5e-08 61.2 47 66.0
A09p15410 Brassica napus HOM05D000141 ORTHO05D001860 5.5e-08 61.2 41 73.2
C09p18680 Brassica napus HOM05D000141 ORTHO05D001860 5.5e-08 61.2 41 73.2
BolC6t38493H Brassica oleracea HOM05D000141 ORTHO05D001860 5.5e-08 61.2 41 70.7
BraA09t37183Z Brassica rapa HOM05D000141 ORTHO05D001860 5.5e-08 61.2 41 73.2
Phvul.004G157000 Phaseolus vulgaris HOM05D000141 ORTHO05D001860 7.2e-08 60.8 69 46.4
Potri.012G056700 Populus trichocarpa HOM05D000141 ORTHO05D001860 7.2e-08 60.8 38 78.9
EL10Ac5g11437 Beta vulgaris HOM05D000141 ORTHO05D001860 9.4e-08 60.5 42 71.4
FAN04G1298 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.2e-07 60.1 56 58.9
FAN08G0207 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.2e-07 60.1 53 60.4
Aa31LG2G850 Aethionema arabicum HOM05D000141 ORTHO05D001860 1.6e-07 59.7 37 75.7
Peaxi162Scf00634g00028 Petunia axillaris HOM05D000141 ORTHO05D001860 1.6e-07 59.7 51 60.8
PGR031G0249 Punica granatum HOM05D000141 ORTHO05D001860 1.6e-07 59.7 38 73.7
Rhsim08G0134600 Rhododendron simsii HOM05D000141 ORTHO05D001860 1.6e-07 59.7 63 49.2
Solyc12g036810.3 Solanum lycopersicum HOM05D000141 ORTHO05D001860 1.6e-07 59.7 51 62.7
Sopen12g018330 Solanum pennellii HOM05D000141 ORTHO05D001860 1.6e-07 59.7 51 62.7
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 2.1e-07 59.3 36 77.8
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 2.1e-07 59.3 36 77.8
BolC9t54556H Brassica oleracea HOM05D000141 ORTHO05D001860 2.1e-07 59.3 36 77.8
AL1G30820 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 2.7e-07 58.9 38 76.3
AT1G18410 Arabidopsis thaliana HOM05D000141 ORTHO05D001860 2.7e-07 58.9 38 76.3
Peaxi162Scf00013g01026 Petunia axillaris HOM05D000141 ORTHO05D001860 2.7e-07 58.9 48 60.4
Zm00001eb153560 Zea mays HOM05D000141 ORTHO05D001860 2.7e-07 58.9 38 71.1
A06p14470 Brassica napus HOM05D000141 ORTHO05D001860 3.6e-07 58.5 37 78.4
Carub.0001s1803 Capsella rubella HOM05D000141 ORTHO05D001860 3.6e-07 58.5 44 68.2
AUR62025894 Chenopodium quinoa HOM05D000141 ORTHO05D001860 3.6e-07 58.5 69 47.8
AUR62029862 Chenopodium quinoa HOM05D000141 ORTHO05D001860 3.6e-07 58.5 69 47.8
Gorai.007G005900 Gossypium raimondii HOM05D000141 ORTHO05D001860 3.6e-07 58.5 45 57.8
Os01g0744000 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D001860 3.6e-07 58.5 38 68.4
Os05g0521300 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D001860 3.6e-07 58.5 38 68.4
BcaB07g31849 Brassica carinata HOM05D000141 ORTHO05D001860 4.7e-07 58.2 37 78.4
C05p16680 Brassica napus HOM05D000141 ORTHO05D001860 4.7e-07 58.2 37 78.4
Sp1g16360 Schrenkiella parvula HOM05D000141 ORTHO05D001860 4.7e-07 58.2 44 70.5
Oeu058029.1 Olea europaea HOM05D000141 ORTHO05D001860 6.1e-07 57.8 51 60.8
Peaxi162Scf00119g00946 Petunia axillaris HOM05D000141 ORTHO05D001860 6.1e-07 57.8 76 48.7
Zm00001eb371130 Zea mays HOM05D000141 ORTHO05D001860 6.1e-07 57.8 38 68.4
AT1G73860 Arabidopsis thaliana HOM05D000141 ORTHO05D001860 8.0e-07 57.4 39 71.8
FAN13G0310 Fragaria x ananassa HOM05D000141 ORTHO05D001860 8.0e-07 57.4 45 62.2
THA.LOC104812143 Tarenaya hassleriana HOM05D000141 ORTHO05D001860 8.0e-07 57.4 38 76.3
VMungo0464G1368 Vigna mungo HOM05D000141 ORTHO05D001860 8.0e-07 57.4 48 60.4
Zm00001eb353510 Zea mays HOM05D000141 ORTHO05D001860 8.0e-07 57.4 38 68.4
FAN18G1630 Fragaria x ananassa HOM05D000141 ORTHO05D001860 1.0e-06 57.0 63 47.6
QL10p025322 Quercus lobata HOM05D000141 ORTHO05D001860 1.0e-06 57.0 42 64.3
TWI81G0735 Tripterygium wilfordii HOM05D000141 ORTHO05D001860 1.0e-06 57.0 44 61.4
Lj2g0007574 Lotus japonicus HOM05D000141 ORTHO05D001860 1.4e-06 56.6 69 46.4
Psat1g037560 Pisum sativum HOM05D000141 ORTHO05D001860 1.4e-06 56.6 44 65.9
Potri.015G047400 Populus trichocarpa HOM05D000141 ORTHO05D001860 1.4e-06 56.6 38 71.1
Sc04g0003520 Simmondsia chinensis HOM05D000141 ORTHO05D001860 1.4e-06 56.6 49 63.3
HPP92_009867 Vanilla planifolia HOM05D000141 ORTHO05D001860 1.4e-06 56.6 45 57.8
BcaC05g25734 Brassica carinata HOM05D000141 ORTHO05D001860 1.8e-06 56.2 37 75.7
Haze_08779 Corylus avellana HOM05D000141 ORTHO05D001860 1.8e-06 56.2 28 96.4
AL2G33680 Arabidopsis lyrata HOM05D000141 ORTHO05D001860 2.3e-06 55.8 38 71.1
BraA06t24571Z Brassica rapa HOM05D000141 ORTHO05D001860 2.3e-06 55.8 36 77.8
Carub.0002s2062 Capsella rubella HOM05D000141 ORTHO05D001860 2.3e-06 55.8 38 71.1
Medtr8g104200 Medicago truncatula HOM05D000141 ORTHO05D001860 2.3e-06 55.8 68 47.1
Sabra12G0040200 Salix brachista HOM05D000141 ORTHO05D001860 2.3e-06 55.8 36 75.0
SHI26928 Sapria himalayana HOM05D000141 ORTHO05D001860 2.3e-06 55.8 38 71.1
Hund11467 Selenicereus undatus HOM05D000141 ORTHO05D001860 2.3e-06 55.8 57 57.9
Zm00001eb293720 Zea mays HOM05D000141 ORTHO05D001860 3.0e-06 55.5 38 65.8
AUR62010684 Chenopodium quinoa HOM05D000141 ORTHO05D001860 4.0e-06 55.1 31 83.9
AUR62017198 Chenopodium quinoa HOM05D000141 ORTHO05D001860 4.0e-06 55.1 31 83.9
Dinv15670 Davidia involucrata HOM05D000141 ORTHO05D001860 4.0e-06 55.1 38 71.1
DCAR_023205 Daucus carota HOM05D000141 ORTHO05D001860 5.2e-06 54.7 48 56.2
TAR374G0639 Trochodendron aralioides HOM05D000141 ORTHO05D001860 5.2e-06 54.7 29 89.7
arahy.Tifrunner.gnm1.ann1.75ML24 Arachis hypogaea HOM05D000141 ORTHO05D001860 6.7e-06 54.3 67 49.3
C06p48010 Brassica napus HOM05D000141 ORTHO05D001860 6.7e-06 54.3 59 54.2
CARHR019010 Cardamine hirsuta HOM05D000141 ORTHO05D001860 6.7e-06 54.3 37 73.0
Haze_18673 Corylus avellana HOM05D000141 ORTHO05D001860 6.7e-06 54.3 45 60.0
Prupe.5G221200 Prunus persica HOM05D000141 ORTHO05D001860 6.7e-06 54.3 38 65.8
arahy.Tifrunner.gnm1.ann1.ZRIJ0L Arachis hypogaea HOM05D000141 ORTHO05D001860 8.8e-06 53.9 58 51.7
CARHR066960 Cardamine hirsuta HOM05D000141 ORTHO05D001860 8.8e-06 53.9 38 68.4
Sp5g29060 Schrenkiella parvula HOM05D000141 ORTHO05D001860 8.8e-06 53.9 38 68.4


User provided reference genes

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