Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1872.1 951 100.0
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1864.7 951 99.7
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1675.2 1099 81.4
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1509.2 1132 71.6
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1502.3 1107 72.6
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1461.0 1109 71.4
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1451.8 1113 70.3
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1449.1 1110 70.5
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1447.6 1112 70.6
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1445.6 1110 69.5
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1444.1 1110 69.5
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1442.2 1112 69.3
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1437.9 1108 70.1
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1435.6 1108 69.8
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1428.7 1124 68.4
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1425.2 1115 69.4
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1422.9 1108 68.5
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1421.8 1108 68.8
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1419.8 1110 69.0
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1417.5 1108 69.3
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1408.3 1109 68.9
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1408.3 1111 68.0
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1403.7 1114 68.2
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1403.7 1101 68.2
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1397.1 1107 68.4
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1395.6 1104 66.9
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1394.4 1098 67.6
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1393.6 1109 67.5
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1393.3 1104 66.9
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1392.1 1104 66.9
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1391.3 1110 67.7
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1390.9 1104 66.9
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1388.6 1109 66.7
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1382.1 1113 67.9
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1380.5 1111 68.5
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1377.1 1150 65.5
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1376.3 1109 66.5
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1373.6 1094 67.9
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1370.9 1108 67.0
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1365.9 1102 66.2
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1365.5 1105 66.3
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1364.0 1200 62.7
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1362.4 1099 67.0
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1362.1 1113 65.0
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1359.7 1115 65.2
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1353.6 1140 65.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1352.8 1112 65.9
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1350.1 1112 65.4
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1348.6 1091 67.4
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1348.2 1081 66.7
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1346.6 1112 65.2
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1345.1 1198 61.1
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1344.7 1104 66.2
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1343.2 1116 65.0
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1341.3 1102 66.2
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1340.9 1032 68.4
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1340.1 1113 65.7
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1339.7 1104 65.6
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1339.3 1110 64.1
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1337.8 1026 68.7
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1334.7 1134 63.2
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1334.3 1111 65.3
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1333.2 1110 64.5
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1332.0 1114 64.9
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1331.6 1103 65.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1325.8 1092 64.7
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1323.5 1109 64.7
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1317.0 1085 65.5
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1314.7 1104 64.1
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1314.7 1107 63.4
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1314.3 1094 65.0
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1313.9 1105 63.4
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1313.1 1104 63.9
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1312.0 1098 63.9
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1311.6 1092 64.7
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1311.2 1103 64.4
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1310.8 1104 63.9
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1309.7 1092 64.6
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1309.7 1104 63.7
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1309.7 1098 63.9
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1309.3 1101 64.2
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1307.0 1107 64.0
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1306.6 1101 64.9
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1305.4 1098 63.9
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1305.0 1098 63.9
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1303.5 1084 64.8
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1303.5 1098 63.6
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1302.0 1101 63.3
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1302.0 1104 63.2
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1301.2 1097 63.7
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1299.3 1086 63.9
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1297.0 1119 62.5
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1295.0 1101 63.7
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1291.9 1103 62.9
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1290.8 1094 63.4
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1289.2 1102 63.4
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1286.9 1108 63.1
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1286.6 1089 63.4
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1285.4 1107 63.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1285.0 1066 63.9
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1280.8 1083 64.2
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1280.8 1116 62.9
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1274.6 1123 61.3
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1268.4 1128 62.1
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1261.5 1173 58.8
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1256.9 1133 60.6
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1231.1 1112 63.8
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1228.4 1205 57.8
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1223.8 1082 61.6
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1193.7 989 63.1
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1171.4 934 66.4
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1142.9 1040 60.3
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1142.1 889 67.8
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1126.7 1039 57.5
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1121.3 1051 56.1
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 6.0e-308 1060.8 977 56.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 1.4e-301 1039.6 822 66.5
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 9.6e-298 1026.9 691 78.0
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 2.4e-296 1022.3 1016 54.0
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 7.9e-292 1007.3 1092 53.1
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 3.3e-266 922.2 748 64.2
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 3.6e-260 902.1 688 69.0
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 8.5e-254 880.9 988 47.8
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 2.7e-252 875.9 722 63.3
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 2.3e-251 872.8 1069 45.9
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.7e-250 868.2 1021 47.6
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 2.9e-246 855.9 591 71.6
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.1e-227 794.3 739 58.1
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 6.4e-217 758.4 902 49.8
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.0e-206 723.0 795 48.4
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 9.3e-192 674.9 475 75.2
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 6.0e-175 619.0 1006 36.9
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.1e-173 614.8 596 57.4
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.9e-173 614.0 908 43.9
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 8.2e-172 608.6 439 73.1
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.0e-166 590.1 527 63.6
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.2e-161 573.9 669 46.9
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.8e-150 537.7 498 62.2
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.8e-147 527.7 1051 35.5
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.7e-140 504.6 329 75.4
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.5e-136 490.7 642 46.1
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 4.4e-133 479.9 705 41.6
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 4.7e-119 433.3 406 59.1
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 7.0e-115 419.5 467 52.5
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 5.2e-110 403.3 267 73.8
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 3.5e-106 390.6 227 84.6
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 6.6e-105 386.3 267 68.9
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.4e-99 368.6 270 66.7
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.1e-98 364.8 267 69.3
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 3.9e-97 360.5 282 71.3
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 1.1e-91 342.4 204 84.8
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.3e-76 292.4 1009 26.8
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.9e-68 264.6 568 31.3
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 3.9e-65 254.2 973 25.0
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 9.6e-64 249.6 157 79.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 7.9e-58 229.9 923 25.7
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 3.9e-49 201.1 301 43.9
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 3.7e-47 194.5 124 79.8
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.4e-46 192.6 280 38.6
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.4e-46 192.6 220 55.0
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.5e-43 181.8 176 57.4
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 2.3e-41 175.3 151 56.3
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 8.2e-39 166.8 122 69.7
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 3.8e-36 157.9 226 42.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 4.2e-35 154.5 149 55.7
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 7.2e-35 153.7 153 52.9
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 4.4e-32 144.4 408 27.5
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 3.5e-29 134.8 162 56.2
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 5.2e-25 120.9 111 53.2
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.2e-24 119.8 138 44.2
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 5.7e-24 117.5 82 68.3
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.2e-23 115.5 450 25.3
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 2.8e-23 115.2 470 26.2
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.4e-22 112.8 259 27.0
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.0e-17 96.7 83 61.4
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.3e-12 79.7 56 67.9
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.0e-12 77.8 131 41.2
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 9.8e-08 63.5 77 45.5
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.8e-07 62.0 54 55.6
ClCG02G005830 Citrullus lanatus HOM05D003855 ORTHO05D004722 2.4e-06 58.9 40 70.0


User provided reference genes

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