Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1870.5 951 100.0
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1864.4 951 99.7
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1674.4 1099 81.4
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1508.4 1132 71.6
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1501.5 1107 72.6
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1460.3 1109 71.4
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1453.3 1113 70.4
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1450.6 1110 70.6
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1448.3 1112 70.7
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1447.2 1110 69.6
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1445.6 1110 69.5
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1443.7 1112 69.4
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1437.2 1108 69.9
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1437.2 1108 70.1
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1430.2 1124 68.5
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1426.4 1115 69.5
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1424.1 1108 68.6
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1423.7 1108 68.9
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1419.1 1110 69.0
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1417.1 1108 69.3
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1409.8 1111 68.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1407.9 1109 68.9
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1405.2 1101 68.3
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1404.8 1114 68.3
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1396.3 1104 67.0
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1396.3 1107 68.4
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1395.6 1098 67.7
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1394.4 1109 67.6
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1394.0 1104 67.0
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1393.3 1104 67.0
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1392.1 1110 67.8
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1392.1 1104 67.0
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1389.4 1109 66.8
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1381.7 1111 68.6
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1380.9 1113 67.8
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1378.6 1150 65.6
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1377.1 1109 66.6
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1374.8 1094 68.0
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1372.5 1108 67.1
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1367.4 1102 66.3
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1366.7 1105 66.4
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1365.5 1200 62.8
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1364.0 1099 67.1
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1362.8 1113 65.1
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1360.5 1115 65.3
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1352.0 1140 64.9
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1350.9 1112 65.5
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1350.1 1111 65.9
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1349.0 1081 66.8
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1347.4 1112 65.3
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1347.4 1091 67.3
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1345.9 1198 61.2
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1343.9 1116 65.1
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1342.4 1103 66.1
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1340.5 1102 66.2
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1340.5 1104 65.7
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1340.5 1113 65.7
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1340.1 1110 64.1
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1338.9 1032 68.2
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1336.2 1026 68.6
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1335.5 1111 65.3
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1333.2 1134 63.1
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1332.8 1110 64.5
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1332.8 1103 65.1
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1330.5 1114 64.8
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1328.5 1092 64.8
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1324.7 1109 64.7
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1318.9 1085 65.6
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1317.4 1104 64.2
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1317.0 1094 65.1
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1316.2 1107 63.5
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1315.8 1104 63.9
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1314.7 1098 64.0
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1314.7 1092 64.7
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1313.9 1103 64.5
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1313.1 1105 63.4
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1312.4 1092 64.7
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1312.4 1104 63.8
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1312.4 1098 64.0
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1312.4 1101 64.3
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1309.3 1104 63.9
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1308.1 1098 64.0
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1308.1 1107 64.1
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1307.7 1098 64.0
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1306.2 1098 63.7
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1304.7 1101 63.4
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1304.7 1104 63.3
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1303.5 1084 64.7
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1303.5 1101 64.7
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1300.8 1097 63.6
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1299.6 1119 62.6
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1298.9 1086 63.8
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1297.7 1101 63.8
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1294.6 1103 63.0
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1290.4 1094 63.3
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1289.2 1089 63.5
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1288.9 1102 63.3
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1286.6 1108 63.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1285.8 1066 64.0
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1285.0 1107 62.9
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1283.1 1083 64.3
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1279.2 1116 62.8
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1277.3 1123 61.4
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1268.8 1128 62.1
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1264.2 1173 58.9
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1258.0 1133 60.7
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1230.7 1112 63.8
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1230.3 1205 57.8
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1224.5 1082 61.6
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1193.3 989 63.1
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1169.1 934 66.3
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1141.3 889 67.8
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1141.3 1040 60.2
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1128.6 1039 57.5
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1119.8 1051 56.0
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 4.6e-308 1061.2 977 56.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 7.1e-301 1037.3 822 66.4
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 3.3e-298 1028.5 691 78.1
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 9.0e-296 1020.4 1025 53.9
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 5.1e-291 1004.6 1088 53.2
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 5.7e-266 921.4 748 64.2
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 8.0e-260 901.0 688 68.9
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 1.2e-252 877.1 722 63.3
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 6.1e-252 874.8 1069 46.3
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 2.0e-250 869.8 1068 45.7
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.4e-250 869.0 1020 47.5
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 2.9e-246 855.9 591 71.6
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.8e-227 793.5 739 58.1
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 4.9e-217 758.8 902 49.8
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.1e-205 721.1 795 48.3
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.2e-192 676.4 475 75.4
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 6.0e-175 619.0 1006 36.9
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.1e-173 614.8 908 44.1
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.9e-173 614.0 596 57.4
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 2.8e-172 610.1 439 73.3
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.0e-166 591.7 527 63.8
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.1e-160 571.6 669 46.8
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 4.7e-151 539.7 498 62.4
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.8e-147 527.7 1051 35.5
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.7e-140 504.6 334 74.6
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 4.2e-136 490.0 642 46.1
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.2e-132 477.6 705 41.4
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.1e-119 434.5 406 59.4
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.2e-114 418.7 467 52.5
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.6e-109 401.0 267 73.4
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.7e-106 391.0 227 84.6
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.1e-104 385.6 267 68.9
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.4e-100 369.8 270 66.7
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.1e-98 364.8 267 69.3
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 1.3e-97 362.1 282 71.6
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 1.1e-91 342.4 204 84.8
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 2.9e-76 291.2 1009 26.8
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.9e-68 263.8 568 31.3
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 3.0e-65 254.6 973 25.0
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 9.6e-64 249.6 157 79.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.1e-58 231.9 923 25.8
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 3.9e-49 201.1 301 43.9
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 3.7e-47 194.5 124 79.8
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.4e-46 192.6 220 55.0
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 2.4e-46 191.8 280 38.6
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.4e-43 182.6 176 57.4
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 2.3e-41 175.3 151 56.3
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 8.2e-39 166.8 122 69.7
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 3.8e-36 157.9 226 42.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 4.2e-35 154.5 149 55.7
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 7.2e-35 153.7 153 52.9
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 5.7e-32 144.1 408 27.5
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 1.2e-29 136.3 162 56.8
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 4.0e-25 121.3 111 53.2
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.2e-24 119.8 138 44.2
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 7.5e-24 117.1 450 25.8
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 9.7e-24 116.7 98 62.2
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 3.7e-23 114.8 470 26.2
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.1e-22 113.2 259 27.0
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.0e-17 96.7 83 61.4
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.3e-12 79.7 56 67.9
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 8.6e-12 77.0 131 40.5
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 9.8e-08 63.5 77 45.5
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 2.8e-07 62.0 54 55.6
ClCG02G005830 Citrullus lanatus HOM05D003855 ORTHO05D004722 2.4e-06 58.9 40 70.0


User provided reference genes

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