Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01821 Corylus avellana HOM05D000350 ORTHO05D000228 1.7e-171 606.3 391 100.0
Cfa005483 Carpinus fangiana HOM05D000350 ORTHO05D000228 9.9e-124 447.6 412 72.1
CiPaw.06G143600 Carya illinoinensis HOM05D000350 ORTHO05D000228 3.3e-87 326.2 557 51.7
Thecc.02G025500 Theobroma cacao HOM05D000350 ORTHO05D000228 7.7e-76 288.5 226 75.2
Duzib248G0668 Durio zibethinus HOM05D000350 ORTHO05D000228 1.9e-74 283.9 226 73.9
CiPaw.05G051300 Carya illinoinensis HOM05D000350 ORTHO05D000228 4.2e-74 282.7 558 49.6
Duzib132G0811 Durio zibethinus HOM05D000350 ORTHO05D000228 5.2e-72 275.8 227 74.9
MD15G1431700 Malus domestica HOM05D000350 ORTHO05D000228 5.2e-72 275.8 239 70.3
MD08G1240000 Malus domestica HOM05D000350 ORTHO05D000228 3.1e-69 266.5 245 68.2
COL.COLO4_17758 Corchorus olitorius HOM05D000350 ORTHO05D000228 9.1e-69 265.0 237 71.3
QL02p099882 Quercus lobata HOM05D000350 ORTHO05D000228 1.0e-67 261.5 249 67.5
Prupe.1G576500 Prunus persica HOM05D000350 ORTHO05D000228 1.3e-67 261.2 239 68.6
Gohir.A01G182200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.3e-64 250.4 237 65.4
Gorai.002G215000 Gossypium raimondii HOM05D000350 ORTHO05D000228 2.3e-64 250.4 237 65.4
Manes.10G120400 Manihot esculenta HOM05D000350 ORTHO05D000228 3.0e-64 250.0 240 68.3
CSS0019031 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.2e-63 248.1 241 59.8
Gohir.D01G173300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 7.5e-63 245.4 236 64.8
TAR381G1380 Trochodendron aralioides HOM05D000350 ORTHO05D000228 7.7e-60 235.3 242 60.3
Cpa.g.sc30.48 Carica papaya HOM05D000350 ORTHO05D000228 1.7e-59 234.2 228 64.9
Lj5P261T19 Lonicera japonica HOM05D000350 ORTHO05D000228 1.9e-58 230.7 217 63.6
Dinv01846 Davidia involucrata HOM05D000350 ORTHO05D000228 9.5e-58 228.4 235 59.6
Cc02_g22960 Coffea canephora HOM05D000350 ORTHO05D000228 2.1e-57 227.3 254 57.5
Nitab4.5_0007913g0020 Nicotiana tabacum HOM05D000350 ORTHO05D000228 2.1e-57 227.3 240 57.5
Gohir.A04G130000 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.8e-56 224.2 232 62.9
Hma1.2p1_1108F.1_g257880 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 3.0e-56 223.4 242 58.7
CSS0012847 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 8.8e-56 221.9 231 56.7
Manes.07G022400 Manihot esculenta HOM05D000350 ORTHO05D000228 1.2e-55 221.5 198 66.7
Gorai.012G166500 Gossypium raimondii HOM05D000350 ORTHO05D000228 1.7e-54 217.6 232 63.4
PGSC0003DMG400024928 Solanum tuberosum HOM05D000350 ORTHO05D000228 2.2e-54 217.2 223 61.9
Potri.004G222100 Populus trichocarpa HOM05D000350 ORTHO05D000228 4.9e-54 216.1 261 60.9
Gohir.D04G175200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.4e-53 213.8 232 62.5
Actinidia39014 Actinidia chinensis HOM05D000350 ORTHO05D000228 9.2e-53 211.8 240 56.7
Sabra01G0168200 Salix brachista HOM05D000350 ORTHO05D000228 2.7e-52 210.3 256 59.0
Oeu000125.1 Olea europaea HOM05D000350 ORTHO05D000228 4.5e-52 209.5 244 57.8
TWI59G0579 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 5.9e-52 209.1 241 57.7
Dinv19395 Davidia involucrata HOM05D000350 ORTHO05D000228 7.7e-52 208.8 235 58.3
Nn5g27611 Nelumbo nucifera HOM05D000350 ORTHO05D000228 1.1e-50 204.9 253 53.8
Rhsim11G0125700 Rhododendron simsii HOM05D000350 ORTHO05D000228 1.1e-50 204.9 240 59.6
Nitab4.5_0000948g0150 Nicotiana tabacum HOM05D000350 ORTHO05D000228 3.3e-50 203.4 213 58.7
Atru.chr6.722 Acer truncatum HOM05D000350 ORTHO05D000228 5.6e-50 202.6 201 62.7
Atru.chr6.728 Acer truncatum HOM05D000350 ORTHO05D000228 5.6e-50 202.6 201 62.7
Lsat_1_v5_gn_5_103680 Lactuca sativa HOM05D000350 ORTHO05D000228 2.8e-49 200.3 251 54.6
DCAR_006683 Daucus carota HOM05D000350 ORTHO05D000228 4.0e-48 196.4 243 53.5
CAN.G798.44 Capsicum annuum HOM05D000350 ORTHO05D000228 5.7e-47 192.6 223 56.1
TAR624G0184 Trochodendron aralioides HOM05D000350 ORTHO05D000228 1.7e-46 191.0 177 65.5
HanXRQChr10g0294511 Helianthus annuus HOM05D000350 ORTHO05D000228 6.4e-46 189.1 239 54.8
Actinidia00187 Actinidia chinensis HOM05D000350 ORTHO05D000228 5.4e-45 186.0 245 54.3
CANSAT54G2211 Cannabis sativa HOM05D000350 ORTHO05D000228 5.4e-45 186.0 192 63.0
TWI23G1234 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 9.2e-45 185.3 210 57.1
Sopen01g046180 Solanum pennellii HOM05D000350 ORTHO05D000228 1.2e-44 184.9 223 56.5
Oeu036680.2 Olea europaea HOM05D000350 ORTHO05D000228 3.5e-44 183.3 270 48.5
TWI14G0578 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.9e-42 177.6 244 50.0
MSTRG.16500 Avicennia marina HOM05D000350 ORTHO05D000228 9.5e-42 175.3 284 47.9
MSTRG.16501 Avicennia marina HOM05D000350 ORTHO05D000228 9.5e-42 175.3 284 47.9
MSTRG.5217 Avicennia marina HOM05D000350 ORTHO05D000228 9.5e-42 175.3 240 53.3
Glyma.16G004300 Glycine max HOM05D000350 ORTHO05D000228 1.8e-40 171.0 255 51.4
VMungo0540G0398 Vigna mungo HOM05D000350 ORTHO05D000228 2.4e-37 160.6 212 50.5
Phvul.006G217800 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 7.0e-37 159.1 272 43.4
Sed0024468 Sechium edule HOM05D000350 ORTHO05D000228 9.2e-37 158.7 194 57.7
CDE08G0860 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 1.2e-36 158.3 236 45.8
Migut.B00803 Erythranthe guttata HOM05D000350 ORTHO05D000228 6.0e-36 156.0 214 50.9
CDE06G0139 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 7.8e-36 155.6 236 45.3
Lj6g0006864 Lotus japonicus HOM05D000350 ORTHO05D000228 3.9e-35 153.3 191 52.9
MBI17_g09748_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 1.1e-34 151.8 250 46.4
ECA234G4001 Erigeron canadensis HOM05D000350 ORTHO05D000228 1.5e-34 151.4 232 50.0
arahy.Tifrunner.gnm1.ann1.22FU97 Arachis hypogaea HOM05D000350 ORTHO05D000228 3.3e-34 150.2 261 43.7
arahy.Tifrunner.gnm1.ann1.ABQ1RQ Arachis hypogaea HOM05D000350 ORTHO05D000228 1.2e-31 141.7 261 46.4
MBI17_g44301_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 2.6e-31 140.6 159 56.6
ClCG11G013380 Citrullus lanatus HOM05D000350 ORTHO05D000228 8.3e-30 135.6 237 46.4
Glyma.12G168300 Glycine max HOM05D000350 ORTHO05D000228 4.1e-29 133.3 263 41.4
Potri.019G081800 Populus trichocarpa HOM05D000350 ORTHO05D000228 2.7e-28 130.6 228 41.7
Psat1g221880 Pisum sativum HOM05D000350 ORTHO05D000228 7.8e-28 129.0 306 40.5
Lalb_Chr20g0123661 Lupinus albus HOM05D000350 ORTHO05D000228 3.0e-27 127.1 259 40.5
Medtr2g006150 Medicago truncatula HOM05D000350 ORTHO05D000228 5.1e-27 126.3 261 46.0
Potri.013G110700 Populus trichocarpa HOM05D000350 ORTHO05D000228 8.6e-27 125.6 229 40.2
Sabra13G0094600 Salix brachista HOM05D000350 ORTHO05D000228 8.6e-27 125.6 257 39.3
Ciclev10000702m.g Citrus clementina HOM05D000350 ORTHO05D000228 4.3e-26 123.2 181 49.2
ATR0584G103 Amborella trichopoda HOM05D000350 ORTHO05D000228 7.3e-26 122.5 218 44.5
HPP92_004434 Vanilla planifolia HOM05D000350 ORTHO05D000228 9.5e-26 122.1 202 44.1
HPP92_027800 Vanilla planifolia HOM05D000350 ORTHO05D000228 1.6e-25 121.3 202 44.1
Sabra19G0093400 Salix brachista HOM05D000350 ORTHO05D000228 2.8e-25 120.6 230 43.0
Dinv15058 Davidia involucrata HOM05D000350 ORTHO05D000228 8.9e-24 115.5 194 45.4
Ca_00051_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 1.2e-23 115.2 269 40.1
MSTRG.25458 Avicennia marina HOM05D000350 ORTHO05D000228 1.5e-23 114.8 232 40.5
SEGI_38392 Sequoiadendron giganteum HOM05D000350 ORTHO05D000228 5.8e-23 112.8 270 38.1
Gohir.D05G276000 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.2e-22 110.9 228 38.6
Thecc.08G186000 Theobroma cacao HOM05D000350 ORTHO05D000228 2.9e-22 110.5 238 39.1
Cc00_g06580 Coffea canephora HOM05D000350 ORTHO05D000228 3.8e-22 110.2 231 39.4
Duzib116G0923 Durio zibethinus HOM05D000350 ORTHO05D000228 3.8e-22 110.2 228 39.0
Gohir.A05G273600 Gossypium hirsutum HOM05D000350 ORTHO05D000228 4.9e-22 109.8 228 38.2
Gorai.009G289000 Gossypium raimondii HOM05D000350 ORTHO05D000228 4.9e-22 109.8 228 38.2
Peaxi162Scf00011g00819 Petunia axillaris HOM05D000350 ORTHO05D000228 1.4e-21 108.2 143 49.0
CsaV3_5G029900 Cucumis sativus L. HOM05D000350 ORTHO05D000228 7.1e-21 105.9 237 40.1
Solyc01g103780.4 Solanum lycopersicum HOM05D000350 ORTHO05D000228 2.1e-20 104.4 158 48.7
GSVIVG01023283001 Vitis vinifera HOM05D000350 ORTHO05D000228 7.8e-20 102.4 92 62.0
Oeu039152.1 Olea europaea HOM05D000350 ORTHO05D000228 2.3e-19 100.9 229 35.4
Oeu021221.1 Olea europaea HOM05D000350 ORTHO05D000228 3.0e-19 100.5 228 37.7
Duzib177G0411 Durio zibethinus HOM05D000350 ORTHO05D000228 3.9e-19 100.1 224 37.1
Manes.18G103100 Manihot esculenta HOM05D000350 ORTHO05D000228 5.1e-19 99.8 245 44.5
DCAR_025352 Daucus carota HOM05D000350 ORTHO05D000228 8.6e-19 99.0 217 36.9
Nitab4.5_0000365g0240 Nicotiana tabacum HOM05D000350 ORTHO05D000228 2.5e-18 97.4 221 38.0
Nitab4.5_0009198g0010 Nicotiana tabacum HOM05D000350 ORTHO05D000228 3.3e-18 97.1 225 39.1
Peaxi162Scf00391g00048 Petunia axillaris HOM05D000350 ORTHO05D000228 3.3e-18 97.1 227 37.0
MELO3C011835.2 Cucumis melo HOM05D000350 ORTHO05D000228 4.3e-18 96.7 207 40.1
Cpa.g.sc66.26 Carica papaya HOM05D000350 ORTHO05D000228 1.2e-17 95.1 201 41.3
SGA_v2.0_scaffold24G10586 Striga asiatica HOM05D000350 ORTHO05D000228 4.0e-16 90.1 164 38.4
Aqoxy6G00142 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 6.9e-16 89.4 238 36.6
Aa31LG2G10990 Aethionema arabicum HOM05D000350 ORTHO05D000228 8.9e-16 89.0 163 41.1
PGR042G1746 Punica granatum HOM05D000350 ORTHO05D000228 5.8e-15 86.3 212 39.6
unitig_578.g16347 Utricularia gibba HOM05D000350 ORTHO05D000228 5.8e-15 86.3 201 37.3
Pp3c10_14310 Physcomitrium patens HOM05D000350 ORTHO05D000228 7.6e-15 85.9 221 40.7
SGA_v2.0_scaffold338G49243 Striga asiatica HOM05D000350 ORTHO05D000228 7.6e-15 85.9 227 36.6
Nitab4.5_0000303g0270 Nicotiana tabacum HOM05D000350 ORTHO05D000228 9.9e-15 85.5 221 35.3
Eucgr.F02587 Eucalyptus grandis HOM05D000350 ORTHO05D000228 1.3e-14 85.1 213 36.2
Nitab4.5_0001082g0060 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.3e-14 85.1 217 33.6
AagrBONN_evm.TU.Sc2ySwM_344.85 Anthoceros agrestis HOM05D026980 ORTHO05D000228 2.9e-14 84.0 218 36.2
Oeu045941.1 Olea europaea HOM05D000350 ORTHO05D000228 2.9e-14 84.0 220 38.2
Migut.C01285 Erythranthe guttata HOM05D000350 ORTHO05D000228 6.4e-14 82.8 247 32.8
BraA09t37482Z Brassica rapa HOM05D000350 ORTHO05D000228 1.4e-13 81.6 216 35.6
THA.LOC104823695 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 1.4e-13 81.6 214 36.4
CARHR053950 Cardamine hirsuta HOM05D000350 ORTHO05D000228 3.2e-13 80.5 183 36.6
A09p18560 Brassica napus HOM05D000350 ORTHO05D000228 4.2e-13 80.1 216 35.6
Peaxi162Scf00268g00069 Petunia axillaris HOM05D000350 ORTHO05D000228 7.1e-13 79.3 156 41.7
BolC9t55236H Brassica oleracea HOM05D000350 ORTHO05D000228 1.6e-12 78.2 214 34.1
PGSC0003DMG400009276 Solanum tuberosum HOM05D000350 ORTHO05D000228 2.1e-12 77.8 137 42.3
BcaC04g22116 Brassica carinata HOM05D000350 ORTHO05D000228 2.7e-12 77.4 214 34.1
C09p23170 Brassica napus HOM05D000350 ORTHO05D000228 2.7e-12 77.4 214 34.1
PGSC0003DMG400026105 Solanum tuberosum HOM05D000350 ORTHO05D000228 3.5e-12 77.0 221 33.9
Manes.02G194200 Manihot esculenta HOM05D000350 ORTHO05D000228 4.6e-12 76.6 181 42.5
Mapoly0068s0102 Marchantia polymorpha HOM05D000350 ORTHO05D000228 4.6e-12 76.6 214 36.4
CSS0010873 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 6.0e-12 76.3 186 38.7
CSS0021064 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 6.0e-12 76.3 186 38.7
Carub.0002s0652 Capsella rubella HOM05D000350 ORTHO05D000228 5.1e-11 73.2 203 35.0
Solyc11g020670.1 Solanum lycopersicum HOM05D000350 ORTHO05D000228 8.7e-11 72.4 186 34.9
Thhalv10023507m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 1.1e-10 72.0 142 40.1
Oeu049819.1 Olea europaea HOM05D000350 ORTHO05D000228 1.9e-10 71.2 106 47.2
Pp3c10_20400 Physcomitrium patens HOM05D000350 ORTHO05D000228 1.9e-10 71.2 237 35.9
Solyc06g065190.1 Solanum lycopersicum HOM05D000350 ORTHO05D000228 1.9e-10 71.2 221 32.1
Sopen06g023690 Solanum pennellii HOM05D000350 ORTHO05D000228 1.9e-10 71.2 221 32.1
Sopen11g010700 Solanum pennellii HOM05D000350 ORTHO05D000228 1.9e-10 71.2 186 36.0
AL2G18050 Arabidopsis lyrata HOM05D000350 ORTHO05D000228 4.3e-10 70.1 199 33.2
AT1G58100 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 5.6e-10 69.7 240 30.0
Oeu024889.1 Olea europaea HOM05D000350 ORTHO05D000228 8.1e-09 65.9 171 35.1
Sp2g05480 Schrenkiella parvula HOM05D000350 ORTHO05D000228 1.8e-08 64.7 167 35.9
SEGI_17926 Sequoiadendron giganteum HOM05D000350 ORTHO05D000228 1.8e-08 64.7 268 31.7
TPR.G2073 Trifolium pratense HOM05D000350 ORTHO05D000228 5.8e-07 59.7 257 28.0
CAN.G308.67 Capsicum annuum HOM05D000350 ORTHO05D000228 9.9e-07 58.9 99 42.4
Thhalv10001860m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 3.8e-06 57.0 133 39.8


User provided reference genes

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