Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.9e-231 805.4 402 100.0
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 4.8e-174 614.8 402 81.8
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 2.2e-166 589.3 402 76.1
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 2.2e-155 552.7 385 74.3
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 5.5e-154 548.1 401 72.6
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 5.2e-152 541.6 400 71.8
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 8.3e-150 534.3 403 70.7
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.1e-149 533.9 402 71.4
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 2.4e-149 532.7 402 71.4
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 3.1e-149 532.3 400 69.8
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.1e-149 531.9 401 70.3
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 7.0e-149 531.2 403 70.2
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 9.2e-149 530.8 400 69.8
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 1.2e-148 530.4 399 68.7
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.2e-148 530.4 400 68.8
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.6e-148 530.0 395 70.1
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 2.0e-148 529.6 403 71.5
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 2.7e-148 529.3 404 69.6
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 4.5e-148 528.5 401 69.1
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 4.5e-148 528.5 395 70.9
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 7.7e-148 527.7 398 69.1
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 3.8e-147 525.4 397 68.8
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 5.0e-147 525.0 416 67.3
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 8.6e-147 524.2 400 69.5
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 8.6e-147 524.2 399 68.4
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.5e-146 523.5 402 69.2
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.9e-146 523.1 398 68.6
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.5e-146 522.7 396 68.7
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 5.6e-146 521.5 392 69.1
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.1e-145 519.6 401 68.6
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 2.1e-145 519.6 391 69.6
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 2.8e-145 519.2 401 68.1
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 8.0e-145 517.7 394 68.8
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 1.0e-144 517.3 385 70.9
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.4e-144 516.9 386 70.5
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.4e-144 516.9 394 67.8
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 3.0e-144 515.8 429 64.6
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.0e-144 515.4 411 66.4
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 8.9e-144 514.2 403 68.0
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.5e-143 513.5 398 68.1
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 2.6e-143 512.7 416 65.6
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 4.4e-143 511.9 397 68.0
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 5.7e-143 511.5 393 68.7
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 7.5e-143 511.1 391 68.3
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.3e-142 510.4 397 67.5
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.7e-142 510.0 397 67.5
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.9e-142 509.2 401 66.8
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 2.9e-142 509.2 399 67.2
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 6.4e-142 508.1 391 68.3
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 4.1e-141 505.4 399 66.2
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 7.0e-141 504.6 406 66.5
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 9.2e-141 504.2 411 65.7
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 1.2e-140 503.8 390 65.1
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 1.6e-140 503.4 406 66.3
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 1.6e-140 503.4 397 66.8
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.0e-140 503.1 392 68.4
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 2.0e-140 503.1 406 66.3
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.3e-139 500.4 397 66.5
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 1.7e-139 500.0 392 67.1
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 6.6e-139 498.0 408 65.2
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 6.6e-139 498.0 406 65.8
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 8.6e-139 497.7 389 67.6
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.5e-138 496.9 400 65.5
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.5e-138 496.9 407 65.4
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 4.3e-138 495.4 393 68.2
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 4.3e-138 495.4 393 68.2
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 5.6e-138 495.0 396 65.7
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 7.3e-138 494.6 407 65.1
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 7.3e-138 494.6 407 65.1
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 1.2e-137 493.8 441 60.1
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 1.2e-137 493.8 402 65.7
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.2e-137 493.8 386 66.8
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 2.1e-137 493.0 386 69.2
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.4e-136 490.3 400 65.5
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.4e-136 490.3 404 65.3
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 2.3e-136 489.6 401 64.6
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.3e-136 489.6 397 64.7
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 3.1e-136 489.2 397 64.7
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 4.0e-136 488.8 397 65.0
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 6.8e-136 488.0 397 65.0
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 1.2e-135 487.3 387 68.0
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.5e-135 486.9 399 65.4
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 2.0e-135 486.5 401 64.6
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 4.4e-135 485.3 402 64.7
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 4.9e-134 481.9 403 64.3
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.9e-133 479.9 394 64.2
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 7.0e-133 478.0 387 64.1
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.0e-132 476.5 403 64.5
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.5e-130 470.3 398 63.1
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 3.3e-130 469.2 374 66.0
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.7e-123 446.8 401 59.9
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 2.5e-122 443.0 408 60.5
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 7.3e-122 441.4 399 59.1
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.6e-121 440.3 387 61.2
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.6e-119 431.4 401 57.1
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.7e-118 430.3 401 56.9
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.5e-114 417.2 288 74.7
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.1e-112 411.0 294 71.4
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 2.6e-111 406.4 419 57.5
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 5.8e-111 405.2 408 54.2
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 1.7e-110 403.7 288 71.9
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 2.9e-110 402.9 398 56.3
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 4.9e-110 402.1 291 70.8
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 1.7e-107 393.7 290 69.0
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 3.8e-102 375.9 399 52.9
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 3.8e-102 375.9 375 57.9
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.4e-101 373.2 402 54.5
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.3e-99 366.7 401 54.4
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 3.3e-98 362.8 293 62.5
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 4.8e-89 332.4 198 80.3
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 9.3e-85 318.2 380 48.7
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 2.8e-73 280.0 301 52.8
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 4.2e-69 266.2 188 67.6
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 6.9e-64 248.8 386 39.6
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 3.4e-63 246.5 134 85.1
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 7.7e-63 245.4 288 52.4
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.3e-62 244.6 136 85.3
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 2.7e-60 236.9 326 41.1
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 2.6e-58 230.3 130 83.1
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 1.7e-57 227.6 200 56.0
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.0e-46 191.8 315 39.4
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.5e-39 166.8 155 58.7
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 1.0e-38 165.2 155 58.1
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 4.7e-36 156.4 147 57.8
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.0e-35 155.2 157 56.1
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.2e-35 152.9 148 56.8
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.2e-35 152.9 148 56.8
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 6.8e-35 152.5 107 72.0
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 5.7e-34 149.4 122 63.1
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 5.7e-34 149.4 148 55.4
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-31 141.4 121 57.9
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 3.6e-28 130.2 167 50.9
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 8.9e-27 125.6 87 70.1
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 3.5e-23 113.6 247 36.4
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 3.5e-23 113.6 81 66.7
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 2.3e-19 100.9 74 70.3
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.6e-18 97.4 54 88.9
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 8.3e-17 92.4 74 64.9
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 2.0e-15 87.8 69 69.6
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 2.0e-15 87.8 118 44.9
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 2.0e-15 87.8 54 77.8
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 1.5e-13 81.6 180 32.2
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 3.1e-11 73.9 89 50.6
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 3.1e-11 73.9 183 35.5
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 3.5e-07 60.5 172 29.1
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 3.5e-07 60.5 173 27.7
SMO367G1061 Selaginella moellendorffii HOM05D001132 ORTHO05D003115 5.1e-06 56.6 164 28.0
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 8.6e-06 55.8 53 56.6
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 8.6e-06 55.8 50 58.0


User provided reference genes

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