Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 6.7e-138 494.2 283 100.0
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 8.8e-122 440.7 280 91.8
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 8.0e-115 417.5 284 85.9
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 4.4e-113 411.8 281 87.9
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 6.3e-112 407.9 275 86.2
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 2.0e-110 402.9 284 81.3
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 5.9e-110 401.4 275 85.1
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.0e-109 400.6 275 84.7
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 1.7e-109 399.8 284 84.2
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 1.2e-107 393.7 283 82.7
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 2.1e-107 392.9 277 85.2
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.7e-107 392.5 284 83.1
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.0e-106 390.6 285 81.8
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.4e-106 390.2 285 81.8
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 2.0e-105 386.3 278 84.5
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 4.4e-105 385.2 283 81.6
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 2.2e-104 382.9 279 83.2
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.1e-103 380.6 284 79.6
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 4.1e-103 378.6 283 81.3
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 4.1e-103 378.6 283 81.3
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 7.0e-103 377.9 279 82.4
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.0e-103 377.9 285 78.9
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 9.1e-103 377.5 284 81.3
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.6e-102 376.7 286 80.4
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.0e-102 376.3 311 70.1
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 3.5e-102 375.6 286 80.1
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 5.9e-102 374.8 301 75.4
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 5.9e-102 374.8 271 83.4
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 5.9e-102 374.8 279 81.4
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 5.9e-102 374.8 298 77.5
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 7.7e-102 374.4 280 82.5
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.7e-101 373.2 277 78.3
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 6.5e-101 371.3 285 79.6
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 1.9e-100 369.8 280 81.1
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.5e-100 369.4 284 77.1
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.2e-100 369.0 293 78.2
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 5.5e-100 368.2 283 79.9
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 1.0e-98 364.0 281 77.9
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 3.0e-98 362.5 283 78.8
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 3.0e-98 362.5 283 78.8
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 3.0e-98 362.5 284 78.9
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.0e-98 362.1 284 78.5
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 1.2e-97 360.5 277 80.9
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.1e-95 354.0 275 75.6
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 1.8e-95 353.2 283 78.1
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 9.1e-95 350.9 284 73.9
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.6e-94 350.1 279 79.9
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 3.5e-94 349.0 288 75.3
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.0e-93 347.4 282 76.6
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.2e-92 342.0 290 74.8
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 5.5e-92 341.7 290 74.1
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.6e-91 340.1 339 65.2
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 2.1e-91 339.7 284 73.6
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 4.7e-91 338.6 286 72.4
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 4.0e-90 335.5 290 73.1
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 8.9e-90 334.3 286 75.5
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 8.9e-90 334.3 246 83.3
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.2e-89 334.0 278 72.7
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 2.6e-89 332.8 286 75.2
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 5.9e-86 321.6 291 72.5
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 3.8e-85 318.9 285 70.5
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 1.5e-84 317.0 229 84.3
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.3e-84 315.5 250 79.6
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.6e-83 313.5 280 68.6
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 2.3e-82 309.7 249 75.5
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 9.8e-81 304.3 280 72.9
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.7e-80 303.5 278 72.7
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 6.4e-80 301.6 212 86.8
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 1.8e-79 300.1 276 71.7
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 2.4e-79 299.7 277 72.6
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 4.1e-79 298.9 273 72.5
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 4.1e-79 298.9 273 72.5
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 5.4e-79 298.5 278 73.0
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 5.4e-79 298.5 340 53.8
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.6e-78 297.0 275 72.7
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-77 293.9 275 71.3
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 1.3e-77 293.9 275 71.3
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 1.5e-76 290.4 282 69.5
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.5e-76 289.7 276 72.1
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 2.5e-76 289.7 284 69.0
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 9.5e-76 287.7 273 71.4
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 9.5e-76 287.7 273 71.4
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 9.5e-76 287.7 275 70.5
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 2.1e-75 286.6 264 70.5
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 2.8e-75 286.2 273 71.1
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 1.1e-74 284.3 220 84.1
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.8e-74 283.5 291 66.7
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 2.3e-74 283.1 272 71.0
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 4.0e-74 282.3 283 61.5
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 2.0e-73 280.0 276 68.8
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 9.8e-73 277.7 268 70.1
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 7.0e-71 271.6 279 62.0
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 1.2e-70 270.8 284 58.8
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.6e-70 270.4 280 65.4
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.7e-70 269.6 275 65.8
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.0e-69 267.7 294 57.8
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 1.1e-68 264.2 191 86.4
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 4.3e-68 262.3 275 64.7
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 7.3e-68 261.5 165 97.6
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 8.1e-67 258.1 275 67.3
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.6e-62 243.8 273 57.9
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 1.1e-60 237.7 281 60.1
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 4.3e-60 235.7 154 94.8
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 2.6e-57 226.5 227 66.1
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 2.2e-56 223.4 286 53.1
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 1.7e-53 213.8 284 47.9
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.1e-51 206.8 274 51.5
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.7e-51 205.7 165 83.0
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 4.4e-49 199.1 274 50.7
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 9.9e-49 198.0 284 44.7
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.9e-48 196.4 216 55.1
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.9e-48 196.4 181 63.0
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.9e-47 193.7 160 67.5
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-45 187.6 174 64.4
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 7.3e-44 181.8 121 99.2
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.6e-43 180.6 121 91.7
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.8e-42 177.2 291 43.3
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 3.1e-42 176.4 134 88.8
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 6.9e-42 175.3 132 69.7
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.6e-38 164.1 227 49.3
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 2.7e-38 163.3 141 73.8
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 7.9e-38 161.8 122 88.5
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 6.7e-37 158.7 114 96.5
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 1.9e-36 157.1 285 42.8
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 7.1e-31 138.7 77 94.8
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 8.7e-29 131.7 164 53.0
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 1.7e-24 117.5 66 93.9
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 8.4e-24 115.2 89 76.4
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.2e-22 111.3 117 55.6
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.7e-16 90.9 100 52.0
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.1e-07 61.6 36 88.9
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 1.4e-07 61.2 61 59.0
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.4e-07 61.2 33 90.9
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 3.2e-07 60.1 122 35.2


User provided reference genes

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