Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 3.3e-144 515.0 258 100.0
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.8e-116 421.8 227 93.4
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 2.6e-96 355.9 227 80.2
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.4e-94 350.1 227 78.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.1e-93 346.3 227 78.0
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.0e-88 329.7 227 71.8
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 7.6e-88 327.8 227 72.2
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 9.9e-88 327.4 227 71.8
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 3.7e-87 325.5 227 72.2
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.1e-86 323.9 227 71.4
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 7.1e-86 321.2 227 71.4
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 4.6e-85 318.5 230 70.0
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.3e-84 317.0 227 69.6
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 6.6e-84 314.7 227 69.6
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.5e-83 312.8 227 70.5
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 4.3e-83 312.0 227 69.2
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 9.6e-83 310.8 227 70.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.2e-82 310.5 227 69.2
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.8e-81 306.6 227 69.6
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 9.9e-80 300.8 227 66.1
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.3e-79 300.4 227 66.5
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.2e-78 295.8 226 66.4
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 7.1e-78 294.7 230 66.5
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 2.7e-77 292.7 226 68.1
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.7e-77 292.7 226 65.9
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 3.5e-77 292.4 230 66.5
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 4.6e-77 292.0 226 65.9
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.0e-76 290.8 227 64.3
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 3.9e-76 288.9 227 64.8
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.9e-75 286.6 226 64.6
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.3e-75 285.8 228 64.0
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 7.3e-75 284.6 227 63.9
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 9.6e-75 284.3 226 62.8
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.8e-74 282.7 231 64.1
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.8e-74 282.7 226 64.2
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.8e-74 282.7 226 64.2
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.8e-74 282.7 226 64.2
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 3.6e-74 282.3 227 66.5
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.1e-73 280.8 226 65.0
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.8e-73 280.0 228 64.0
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 4.0e-73 278.9 227 64.3
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 5.3e-73 278.5 226 64.6
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 6.9e-73 278.1 227 62.6
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 9.0e-73 277.7 226 64.6
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.2e-72 277.3 227 62.6
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.2e-72 277.3 227 61.7
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.5e-72 276.9 224 63.8
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 2.6e-72 276.2 227 63.9
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 2.6e-72 276.2 224 63.8
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-71 273.9 227 62.6
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 2.2e-71 273.1 227 63.9
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.9e-71 271.9 227 62.1
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 6.4e-71 271.6 228 63.6
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.4e-71 271.6 227 61.7
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 1.1e-70 270.8 228 61.8
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.4e-70 269.6 248 58.5
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 1.6e-69 266.9 229 59.8
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 3.5e-69 265.8 227 59.5
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 7.9e-69 264.6 228 62.3
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.3e-68 263.8 204 67.6
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 3.9e-68 262.3 227 58.1
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 3.9e-68 262.3 227 59.9
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.9e-68 262.3 227 62.6
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 3.9e-68 262.3 319 48.9
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 1.9e-67 260.0 228 60.5
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 7.3e-67 258.1 226 61.5
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.8e-66 256.1 227 56.8
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 3.6e-66 255.8 229 59.0
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 8.1e-66 254.6 227 58.1
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 3.1e-65 252.7 227 55.9
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 3.1e-65 252.7 239 56.1
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 3.1e-65 252.7 227 55.5
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 5.3e-65 251.9 227 58.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 6.9e-65 251.5 226 59.7
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.5e-64 250.4 227 59.9
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 2.6e-64 249.6 228 58.3
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.6e-64 249.6 230 56.5
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.6e-64 249.6 227 59.0
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 5.8e-64 248.4 227 56.4
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.1e-62 244.2 228 54.4
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.1e-62 244.2 228 54.4
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.4e-62 243.8 228 54.4
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.4e-62 243.8 228 54.4
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.4e-62 243.8 228 54.4
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.4e-62 243.0 227 56.8
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 4.2e-62 242.3 228 57.5
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 9.3e-62 241.1 227 53.7
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.2e-61 240.7 227 55.9
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.1e-61 240.0 227 52.4
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.3e-60 237.3 229 52.8
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.1e-59 234.2 182 66.5
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.5e-59 233.8 227 56.4
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.5e-59 233.8 227 56.4
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 5.6e-59 231.9 227 53.7
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 2.4e-57 226.5 233 53.2
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 4.0e-57 225.7 229 53.3
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 9.0e-57 224.6 178 65.2
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 6.5e-55 218.4 234 51.3
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.4e-54 217.2 229 49.3
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.5e-54 215.3 231 52.8
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 5.5e-54 215.3 176 63.1
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.2e-53 214.2 176 63.1
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 2.3e-52 209.9 252 47.6
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.4e-49 200.7 226 49.6
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 2.0e-48 196.8 228 51.8
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 4.3e-43 179.1 228 45.6
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 5.3e-41 172.2 171 55.0
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 5.0e-39 165.6 233 44.2
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 8.5e-39 164.9 226 42.0
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 7.2e-38 161.8 230 42.6
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.6e-37 160.6 231 42.4
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.1e-33 147.9 175 46.3
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 5.3e-33 145.6 248 35.9
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 2.9e-31 139.8 229 38.0
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.1e-29 133.7 151 51.7
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.4e-28 131.0 150 49.3
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.1e-28 129.0 75 74.7
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 6.7e-28 128.6 78 71.8
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.5e-27 127.5 76 73.7
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 2.6e-27 126.7 72 75.0
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.6e-27 126.7 112 58.0
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 4.4e-27 125.9 103 61.2
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.3e-26 124.4 112 57.1
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 7.2e-22 108.6 78 67.9
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.6e-16 90.9 123 52.0
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 7.7e-16 88.6 246 26.8
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 8.5e-15 85.1 289 26.6
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 2.7e-13 80.1 83 54.2
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 5.7e-11 72.4 44 70.5
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 6.3e-10 68.9 90 52.2
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 2.0e-08 63.9 69 46.4
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 2.7e-08 63.5 53 60.4
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 4.5e-08 62.8 56 57.1
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 4.5e-08 62.8 56 57.1
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.3e-07 61.2 224 27.2
FAN03G1151 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.7e-07 60.8 50 58.0
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.7e-07 60.8 47 59.6
FAN24G0029 Fragaria x ananassa HOM05D004092 ORTHO05D016651 5.0e-07 59.3 47 59.6


User provided reference genes

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