Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.6e-153 546.2 305 100.0
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 9.8e-127 457.2 281 93.2
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 5.6e-106 388.3 284 82.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 4.0e-104 382.1 281 79.4
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 2.0e-103 379.8 281 78.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 7.3e-98 361.3 286 73.8
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.3e-96 356.3 282 74.8
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.2e-96 355.1 296 67.9
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.2e-96 355.1 296 67.9
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.0e-95 353.2 296 67.6
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 5.8e-95 351.7 292 66.8
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.7e-94 350.1 292 66.4
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.7e-94 350.1 296 67.6
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 1.7e-94 350.1 296 66.9
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.9e-94 349.4 296 65.5
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 2.9e-94 349.4 296 70.3
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 6.4e-94 348.2 296 66.9
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 4.1e-93 345.5 295 67.1
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 4.1e-93 345.5 287 69.0
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.3e-91 340.5 296 68.9
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 3.0e-91 339.3 295 68.8
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.5e-90 337.0 296 68.9
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.9e-90 336.7 303 66.7
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 7.3e-90 334.7 298 68.5
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.2e-89 334.0 293 65.5
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 2.1e-89 333.2 288 69.8
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.6e-89 332.4 289 67.5
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 6.2e-89 331.6 279 68.1
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.3e-88 329.7 279 66.3
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.3e-88 329.7 280 65.4
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.1e-88 329.3 295 68.1
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 8.9e-88 327.8 279 66.3
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.2e-87 327.4 298 63.8
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 1.5e-87 327.0 293 65.2
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.0e-87 326.6 279 69.2
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.8e-87 325.1 304 64.5
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 5.8e-87 325.1 283 66.1
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 5.8e-87 325.1 292 63.0
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.3e-86 323.9 298 64.4
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.9e-86 322.8 300 65.0
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 4.9e-86 322.0 279 64.2
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.9e-86 322.0 298 64.1
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 6.4e-86 321.6 300 61.3
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 8.4e-86 321.2 298 64.1
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 8.4e-86 321.2 287 64.5
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.4e-85 320.5 281 64.1
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 3.2e-85 319.3 279 67.4
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 4.1e-85 318.9 308 64.3
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.7e-84 316.2 298 63.1
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 3.5e-84 315.8 298 66.1
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 3.5e-84 315.8 284 66.5
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 3.5e-84 315.8 281 68.0
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 6.0e-84 315.1 286 68.2
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.0e-83 314.3 286 69.2
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-83 313.5 293 65.5
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 2.3e-83 313.2 298 65.1
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 2.3e-83 313.2 294 64.3
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.3e-83 313.2 293 66.6
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 2.3e-83 313.2 284 63.4
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 3.9e-83 312.4 276 63.4
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 5.1e-83 312.0 314 58.3
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 8.6e-83 311.2 285 66.3
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.2e-81 307.4 283 64.0
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.6e-81 307.0 300 65.0
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 2.8e-81 306.2 287 63.4
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.7e-81 305.4 283 65.0
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 3.1e-80 302.8 303 64.7
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 9.9e-79 297.7 284 64.4
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.4e-77 293.9 283 64.7
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.6e-76 290.4 295 61.4
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 3.5e-76 289.3 280 64.3
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 7.8e-76 288.1 307 59.9
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.0e-75 287.7 279 62.4
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 2.5e-74 283.1 280 62.1
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 9.6e-74 281.2 283 58.0
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 9.6e-74 281.2 297 58.9
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.4e-72 277.3 283 60.4
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 5.3e-72 275.4 292 60.6
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.2e-71 274.2 286 60.1
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 2.6e-71 273.1 282 59.9
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 2.6e-71 273.1 282 59.9
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 5.8e-71 271.9 285 61.8
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.3e-70 270.8 281 55.9
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 6.4e-70 268.5 281 54.8
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 8.4e-70 268.1 267 61.8
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 8.4e-70 268.1 281 56.6
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.1e-69 267.7 282 58.9
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.1e-69 267.7 296 53.7
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.4e-69 267.3 290 59.7
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.9e-69 266.9 284 56.0
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 1.9e-69 266.9 286 55.2
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 4.2e-69 265.8 281 57.7
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 1.2e-68 264.2 299 59.2
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.6e-68 263.8 298 57.7
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.1e-66 257.7 283 58.3
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.1e-66 257.7 283 58.3
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 2.5e-66 256.5 282 55.3
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 2.0e-63 246.9 288 54.2
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 9.3e-61 238.0 295 49.8
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.1e-60 236.9 314 50.0
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 7.4e-58 228.4 317 47.3
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.8e-57 226.5 246 59.3
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 2.5e-50 203.4 289 46.7
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 5.7e-50 202.2 277 46.6
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.3e-46 191.0 291 44.3
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.2e-46 190.3 264 47.7
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 7.9e-44 181.8 262 45.8
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 8.7e-43 178.3 197 55.3
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.7e-41 174.1 177 63.8
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 5.7e-34 149.1 117 70.9
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.3e-33 147.9 269 42.0
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.1e-32 144.8 111 70.3
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.1e-32 144.8 117 68.4
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 5.3e-32 142.5 270 41.1
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 1.5e-31 141.0 269 40.9
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.0e-30 138.3 281 39.5
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.1e-29 134.8 98 75.5
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.2e-28 131.3 312 35.9
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.6e-28 131.0 308 36.4
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 5.7e-26 122.5 295 35.9
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 4.1e-24 116.3 96 63.5
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 7.2e-21 105.5 178 48.9
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 5.7e-18 95.9 64 79.7
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.7e-17 94.4 76 64.5
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.1e-16 91.7 181 46.4
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 7.0e-16 89.0 184 46.2
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 4.5e-15 86.3 404 26.2
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 4.2e-13 79.7 339 26.3
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 6.1e-12 75.9 55 69.1
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.8e-11 72.4 50 70.0
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.4e-10 70.1 119 33.6


User provided reference genes

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