Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01654 Corylus avellana HOM05D003448 ORTHO05D004028 1.6e-86 322.8 175 100.0
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 1.5e-39 166.8 128 72.7
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 5.6e-34 148.3 141 63.1
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 1.0e-32 144.1 113 70.8
Haze_01655 Corylus avellana HOM05D055045 ORTHO05D004028 1.2e-31 140.6 139 63.3
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 3.4e-23 112.5 139 48.2
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 3.7e-22 109.0 143 44.8
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 6.4e-22 108.2 144 44.4
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 2.3e-19 99.8 145 43.4
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 3.0e-19 99.4 140 45.0
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 1.9e-18 96.7 139 46.8
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 6.2e-17 91.7 129 45.7
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 1.8e-16 90.1 145 42.1
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 1.8e-16 90.1 145 42.1
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 4.0e-16 89.0 151 39.1
Haze_24964 Corylus avellana HOM05D055045 ORTHO05D004028 1.5e-15 87.0 75 78.7
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 2.6e-15 86.3 146 41.1
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.9e-14 82.8 154 39.0
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 4.9e-14 82.0 146 45.9
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 4.9e-14 82.0 145 41.4
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 6.4e-14 81.6 140 37.9
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 6.4e-14 81.6 152 38.2
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 8.4e-14 81.3 152 38.8
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 8.4e-14 81.3 152 38.8
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 1.1e-13 80.9 134 39.6
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 1.4e-13 80.5 158 36.7
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 1.9e-13 80.1 126 38.9
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.4e-13 79.7 130 42.3
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 4.1e-13 79.0 153 37.3
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.1e-13 79.0 130 43.1
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.1e-13 78.2 161 36.6
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 7.1e-13 78.2 146 39.0
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 1.2e-12 77.4 139 33.8
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.2e-12 77.4 146 38.4
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 1.6e-12 77.0 138 35.5
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.1e-12 76.6 146 32.2
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 2.7e-12 76.3 156 37.2
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 3.5e-12 75.9 128 33.6
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 6.0e-12 75.1 145 37.2
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 6.0e-12 75.1 119 43.7
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 7.8e-12 74.7 126 34.1
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 7.8e-12 74.7 126 34.9
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.0e-11 74.3 145 38.6
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.0e-11 74.3 150 36.7
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 1.3e-11 73.9 87 46.0
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 1.3e-11 73.9 140 37.1
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 2.3e-11 73.2 147 35.4
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 3.9e-11 72.4 130 34.6
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 5.1e-11 72.0 122 38.5
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 5.1e-11 72.0 145 37.9
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.9e-10 70.1 100 45.0
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 1.9e-10 70.1 74 55.4
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 2.5e-10 69.7 143 35.7
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 5.6e-10 68.6 133 36.8
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 5.6e-10 68.6 143 37.1
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 7.3e-10 68.2 129 37.2
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 9.6e-10 67.8 150 33.3
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 1.2e-09 67.4 140 37.9
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 1.2e-09 67.4 87 46.0
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.2e-09 67.4 148 37.8
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 2.1e-09 66.6 92 46.7
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.6e-09 65.9 156 34.6
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 3.6e-09 65.9 140 36.4
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 4.7e-09 65.5 88 42.0
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 6.2e-09 65.1 143 35.7
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 6.2e-09 65.1 118 39.8
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 1.4e-08 63.9 138 37.7
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.8e-08 63.5 156 34.0
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 1.8e-08 63.5 131 35.1
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.4e-08 63.2 107 39.3
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 2.4e-08 63.2 124 37.1
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 3.1e-08 62.8 136 37.5
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 5.2e-08 62.0 156 30.8
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 8.9e-08 61.2 97 39.2
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 8.9e-08 61.2 165 33.9
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 8.9e-08 61.2 149 36.9
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 1.2e-07 60.8 75 50.7
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 2.0e-07 60.1 74 48.6
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 2.0e-07 60.1 130 35.4
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 2.6e-07 59.7 88 42.0
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.4e-07 58.9 91 39.6
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 5.8e-07 58.5 138 34.8
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 9.9e-07 57.8 131 34.4
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 9.9e-07 57.8 128 35.9
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 1.3e-06 57.4 45 57.8
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.3e-06 57.4 143 35.0
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 1.3e-06 57.4 115 40.0
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 2.2e-06 56.6 74 44.6
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 2.2e-06 56.6 99 41.4
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 2.9e-06 56.2 127 31.5
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 4.9e-06 55.5 93 37.6
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 6.4e-06 55.1 90 40.0
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 6.4e-06 55.1 90 40.0
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 6.4e-06 55.1 112 36.6
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 6.4e-06 55.1 98 41.8
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 8.4e-06 54.7 103 37.9
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 8.4e-06 54.7 91 36.3


User provided reference genes

Program Settings