Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01504 Corylus avellana HOM05D008235 ORTHO05D009358 0.0e+00 1655.6 809 100.0
QL10p049494 Quercus lobata HOM05D008235 ORTHO05D009358 4.8e-197 692.2 532 70.5
CiPaw.01G099800 Carya illinoinensis HOM05D008235 ORTHO05D009358 3.8e-109 400.2 479 50.3
Potri.007G128500 Populus trichocarpa HOM05D008235 ORTHO05D009358 6.9e-103 379.4 533 44.1
CANSAT78G2326 Cannabis sativa HOM05D008235 ORTHO05D009358 1.0e-98 365.5 456 46.9
Thecc.04G179500 Theobroma cacao HOM05D008235 ORTHO05D009358 1.1e-97 362.1 534 43.3
Potri.017G029800 Populus trichocarpa HOM05D008235 ORTHO05D009358 6.2e-96 356.3 533 42.8
Gohir.D02G114100 Gossypium hirsutum HOM05D008235 ORTHO05D009358 3.9e-90 337.0 531 40.9
Gorai.005G128900 Gossypium raimondii HOM05D008235 ORTHO05D009358 3.7e-88 330.5 532 40.8
TAR365G0029 Trochodendron aralioides HOM05D008235 ORTHO05D009358 1.1e-87 328.9 557 40.2
Ciclev10019428m.g Citrus clementina HOM05D008235 ORTHO05D009358 1.8e-87 328.2 508 42.7
Duzib212G0859 Durio zibethinus HOM05D008235 ORTHO05D009358 1.8e-87 328.2 533 40.2
Sabra07G0105000 Salix brachista HOM05D008235 ORTHO05D009358 3.1e-87 327.4 559 39.4
Dinv22732 Davidia involucrata HOM05D008235 ORTHO05D009358 2.6e-86 324.3 444 44.6
MD04G1040900 Malus domestica HOM05D008235 ORTHO05D009358 7.6e-86 322.8 456 44.3
Sabra17G0019200 Salix brachista HOM05D008235 ORTHO05D009358 1.3e-85 322.0 487 41.5
Gohir.A03G088800 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.6e-83 315.1 532 38.9
Gorai.011G142400 Gossypium raimondii HOM05D008235 ORTHO05D009358 1.5e-81 308.5 535 39.1
Manes.04G042909 Manihot esculenta HOM05D008235 ORTHO05D009358 1.2e-78 298.9 527 40.4
Manes.11G121000 Manihot esculenta HOM05D008235 ORTHO05D009358 7.1e-76 289.7 560 38.0
Duzib268G0443 Durio zibethinus HOM05D008235 ORTHO05D009358 7.4e-73 279.6 425 38.6
CSS0022265 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 1.0e-66 259.2 547 35.8
Gohir.D10G129000 Gossypium hirsutum HOM05D008235 ORTHO05D009358 1.0e-66 259.2 453 37.3
Dinv44188 Davidia involucrata HOM05D008235 ORTHO05D009358 1.5e-65 255.4 532 35.7
CSS0049607 Camellia sinensis var. sinensis HOM05D008235 ORTHO05D009358 1.7e-64 251.9 479 36.7
Gohir.A10G137600 Gossypium hirsutum HOM05D008235 ORTHO05D009358 4.8e-64 250.4 455 36.7
Phvul.011G054200 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 8.2e-64 249.6 424 40.1
VMungo1127G1046 Vigna mungo HOM05D008235 ORTHO05D009358 3.1e-63 247.7 420 39.5
Lj3g0014084 Lotus japonicus HOM05D008235 ORTHO05D009358 2.0e-62 245.0 431 39.4
GSVIVG01010760001 Vitis vinifera HOM05D008235 ORTHO05D009358 2.1e-59 235.0 519 36.0
TAR636G0036 Trochodendron aralioides HOM05D008235 ORTHO05D009358 1.4e-58 232.3 457 36.3
Ca_20789_v3 Cicer arietinum L. HOM05D008235 ORTHO05D009358 2.3e-58 231.5 405 40.2
Actinidia35979 Actinidia chinensis HOM05D008235 ORTHO05D009358 5.1e-58 230.3 442 37.3
Glyma.12G052200 Glycine max HOM05D008235 ORTHO05D009358 4.4e-57 227.3 406 38.9
Lalb_Chr22g0352131 Lupinus albus HOM05D008235 ORTHO05D009358 1.7e-56 225.3 453 38.6
Glyma.11G127600 Glycine max HOM05D008235 ORTHO05D009358 2.2e-56 224.9 405 39.0
Nn1g09629 Nelumbo nucifera HOM05D008235 ORTHO05D009358 2.2e-56 224.9 590 35.6
Actinidia34601 Actinidia chinensis HOM05D008235 ORTHO05D009358 2.8e-56 224.6 423 40.0
COL.COLO4_07668 Corchorus olitorius HOM05D008235 ORTHO05D009358 1.1e-55 222.6 337 41.2
arahy.Tifrunner.gnm1.ann1.TK6P88 Arachis hypogaea HOM05D008235 ORTHO05D009358 1.7e-53 215.3 431 39.0
arahy.Tifrunner.gnm1.ann1.V6VI7P Arachis hypogaea HOM05D008235 ORTHO05D009358 4.2e-52 210.7 425 38.1
Cpa.g.sc9.283 Carica papaya HOM05D008235 ORTHO05D009358 9.4e-52 209.5 587 32.0
ClCG07G015680 Citrullus lanatus HOM05D008235 ORTHO05D009358 4.1e-47 194.1 412 36.4
CsaV3_4G003430 Cucumis sativus L. HOM05D008235 ORTHO05D009358 2.9e-45 188.0 409 35.5
Sed0015774 Sechium edule HOM05D008235 ORTHO05D009358 8.0e-43 179.9 415 35.4
Glyma.13G344300 Glycine max HOM05D008235 ORTHO05D009358 2.3e-42 178.3 354 33.9
MELO3C017713.2 Cucumis melo HOM05D008235 ORTHO05D009358 1.5e-41 175.6 411 34.5
vmacro00622 Vaccinium macrocarpon HOM05D008235 ORTHO05D009358 7.0e-39 166.8 477 31.7
Medtr4g067260 Medicago truncatula HOM05D008235 ORTHO05D009358 7.7e-38 163.3 418 33.7
TPR.G34237 Trifolium pratense HOM05D008235 ORTHO05D009358 8.8e-34 149.8 403 32.3
Oeu053824.1 Olea europaea HOM05D008235 ORTHO05D009358 2.2e-32 145.2 565 28.5
Eucgr.A00083 Eucalyptus grandis HOM05D008235 ORTHO05D009358 4.9e-32 144.1 332 35.2
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.7e-29 135.6 429 31.5
RhsimUnG0195000 Rhododendron simsii HOM05D008235 ORTHO05D009358 1.7e-29 135.6 429 31.5
Cc03_g12910 Coffea canephora HOM05D008235 ORTHO05D009358 9.5e-28 129.8 408 30.1
THA.LOC104800392 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 2.8e-27 128.3 415 30.6
THA.LOC104803712 Tarenaya hassleriana HOM05D009929 ORTHO05D009358 2.0e-25 122.1 449 30.1
AL5G41340 Arabidopsis lyrata HOM05D009929 ORTHO05D009358 3.4e-25 121.3 327 30.3
Duzib151G0752 Durio zibethinus HOM05D008235 ORTHO05D009358 1.4e-23 115.9 144 50.7
Glyma.15G030050 Glycine max HOM05D008235 ORTHO05D009358 4.1e-23 114.4 159 45.9
PSO675G1581 Papaver somniferum HOM05D066249 ORTHO05D009358 5.9e-22 110.5 387 29.2
AT3G59430 Arabidopsis thaliana HOM05D009929 ORTHO05D009358 2.3e-21 108.6 324 28.4
Psat7g208600 Pisum sativum HOM05D008235 ORTHO05D009358 2.9e-21 108.2 399 29.6
Aqoxy2G04121 Aquilegia oxysepala HOM05D008235 ORTHO05D009358 3.9e-21 107.8 400 31.8
Phvul.005G153000 Phaseolus vulgaris HOM05D008235 ORTHO05D009358 2.5e-20 105.1 433 29.1
Sp5g03710 Schrenkiella parvula HOM05D009929 ORTHO05D009358 4.3e-20 104.4 312 28.5
Carub.0005s2617 Capsella rubella HOM05D009929 ORTHO05D009358 4.7e-19 100.9 324 27.5
PSO017G5357 Papaver somniferum HOM05D066249 ORTHO05D009358 8.9e-18 96.7 382 30.4
Thhalv10005962m.g Eutrema salsugineum HOM05D009929 ORTHO05D009358 1.2e-17 96.3 437 26.3
EL10Ac3g05943 Beta vulgaris HOM05D019141 ORTHO05D009358 2.2e-16 92.0 495 25.1
Hund03161 Selenicereus undatus HOM05D019141 ORTHO05D009358 6.4e-16 90.5 291 30.2
Aa31LG1G25120 Aethionema arabicum HOM05D009929 ORTHO05D006942 5.4e-15 87.4 356 28.9
Ah.13g072860 Amaranthus hybridus HOM05D019141 ORTHO05D009358 7.0e-15 87.0 297 28.6
CARHR169830 Cardamine hirsuta HOM05D009929 ORTHO05D009358 5.0e-13 80.9 339 26.5
CAN.G112.20 Capsicum annuum HOM05D014650 ORTHO05D022197 6.6e-13 80.5 432 27.8
BcaC07g40284 Brassica carinata HOM05D009929 ORTHO05D009358 1.1e-12 79.7 321 25.2
C08p34440 Brassica napus HOM05D009929 ORTHO05D009358 1.1e-12 79.7 321 25.2
BolC8t51045H Brassica oleracea HOM05D009929 ORTHO05D009358 1.1e-12 79.7 321 25.2
AUR62002309 Chenopodium quinoa HOM05D019141 ORTHO05D009358 1.2e-11 76.3 306 29.1
Sc13g0006760 Simmondsia chinensis HOM05D008235 ORTHO05D009358 2.1e-11 75.5 346 25.7
A09p51710 Brassica napus HOM05D009929 ORTHO05D009358 3.6e-11 74.7 199 28.6
BraA09t40607Z Brassica rapa HOM05D009929 ORTHO05D009358 4.7e-11 74.3 320 25.3
Nitab4.5_0011467g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 6.2e-11 73.9 184 33.7
Sopen05g029150 Solanum pennellii HOM05D014650 ORTHO05D022197 5.2e-10 70.9 431 24.8
AUR62015381 Chenopodium quinoa HOM05D019141 ORTHO05D009358 6.8e-10 70.5 491 25.9
Peaxi162Scf01052g00325 Petunia axillaris HOM05D014650 ORTHO05D009358 8.9e-10 70.1 409 24.7
Solyc05g050740.3 Solanum lycopersicum HOM05D014650 ORTHO05D009358 3.4e-09 68.2 98 38.8
BcaC07g40472 Brassica carinata HOM05D009929 ORTHO05D009358 7.5e-09 67.0 190 28.9
QL93p0089_0059 Quercus lobata HOM05D000003 ORTHO05D000004 7.5e-09 67.0 170 27.1
QL93p0340_0006 Quercus lobata HOM05D000003 ORTHO05D000004 7.5e-09 67.0 170 27.1
QL06p038224 Quercus lobata HOM05D000003 ORTHO05D000004 3.7e-08 64.7 169 27.2
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 4.9e-08 64.3 172 28.5
QL10p023951 Quercus lobata HOM05D003769 ORTHO05D004521 6.4e-08 63.9 220 26.4
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 1.1e-07 63.2 49 57.1
QL06p022241 Quercus lobata HOM05D000200 ORTHO05D000262 2.4e-07 62.0 172 27.9
CSS0009557 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D009827 5.4e-07 60.8 129 27.9
Nn7g37621 Nelumbo nucifera HOM05D008235 ORTHO05D009358 7.1e-07 60.5 91 50.5
Nitab4.5_0002598g0040 Nicotiana tabacum HOM05D014650 ORTHO05D009358 7.1e-07 60.5 165 30.9
ATR0824G133 Amborella trichopoda HOM05D008235 ORTHO05D009358 1.6e-06 59.3 40 65.0
QL08p043628 Quercus lobata HOM05D000115 ORTHO05D005317 3.5e-06 58.2 87 37.9
QL12p039879 Quercus lobata HOM05D000003 ORTHO05D000004 3.5e-06 58.2 49 49.0
QL06p011649 Quercus lobata HOM05D002853 ORTHO05D003030 6.0e-06 57.4 161 28.6


User provided reference genes

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