Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 4.4e-283 977.2 475 100.0
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 2.7e-232 808.5 478 84.7
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 5.5e-193 677.9 476 71.6
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 5.5e-185 651.4 477 66.9
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 2.2e-181 639.4 474 66.5
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.9e-177 626.3 477 65.2
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 4.2e-177 625.2 480 66.2
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.6e-176 623.2 477 63.7
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 7.9e-176 620.9 472 64.8
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 9.7e-174 614.0 477 62.7
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 4.8e-173 611.7 475 64.2
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.1e-172 610.5 477 62.9
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.1e-172 610.5 475 64.0
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 3.1e-172 609.0 478 63.8
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 4.1e-172 608.6 475 63.4
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 7.0e-172 607.8 477 62.3
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 9.1e-172 607.4 473 63.4
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 1.2e-171 607.1 473 63.4
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 3.5e-171 605.5 477 63.7
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 7.7e-171 604.4 479 61.6
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.2e-170 602.8 479 61.8
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 2.2e-170 602.8 477 61.6
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 2.9e-170 602.4 475 62.7
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 6.5e-170 601.3 475 62.5
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.1e-169 600.5 475 61.3
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.5e-169 599.4 473 63.0
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.5e-169 599.4 472 62.9
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 3.2e-169 599.0 475 63.2
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 3.2e-169 599.0 479 61.4
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 7.2e-169 597.8 477 61.8
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 1.6e-168 596.7 472 63.1
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 2.1e-168 596.3 477 60.8
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.6e-168 595.5 477 62.9
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 3.6e-168 595.5 477 61.8
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 4.7e-168 595.1 520 58.5
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 1.0e-167 594.0 475 60.4
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.3e-167 592.8 474 63.5
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 2.3e-167 592.8 477 61.0
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 4.0e-167 592.0 472 62.3
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 5.2e-167 591.7 472 62.1
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 6.7e-167 591.3 472 62.5
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 8.8e-167 590.9 477 60.2
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 1.5e-166 590.1 475 61.3
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.5e-166 587.8 451 67.4
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 1.7e-165 586.6 475 62.7
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 4.8e-165 585.1 479 59.9
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.1e-164 583.9 476 61.1
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 3.1e-164 582.4 475 59.8
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.5e-163 578.9 475 62.3
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 1.3e-162 577.0 474 59.5
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 8.5e-162 574.3 475 60.8
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 2.5e-161 572.8 476 60.7
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.5e-161 572.8 475 60.8
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 4.2e-161 572.0 476 62.2
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 7.2e-161 571.2 487 58.3
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 7.2e-161 571.2 475 60.4
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 9.4e-161 570.9 474 60.1
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 1.2e-160 570.5 476 60.9
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.2e-160 570.5 471 60.3
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 2.7e-160 569.3 479 58.7
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 6.1e-160 568.2 473 60.0
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 1.8e-159 566.6 472 59.7
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 4.0e-159 565.5 472 60.2
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 1.5e-158 563.5 479 58.9
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 9.8e-158 560.8 478 59.6
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 8.3e-157 557.8 478 58.8
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 2.4e-156 556.2 473 58.4
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 2.4e-156 556.2 480 58.5
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 2.4e-156 556.2 472 59.3
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 2.4e-156 556.2 478 59.4
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 4.5e-155 552.0 474 58.6
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 5.9e-155 551.6 475 59.8
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 7.7e-155 551.2 384 71.6
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 1.3e-154 550.4 451 60.5
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 2.9e-154 549.3 449 61.5
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.5e-153 547.0 433 62.8
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 2.5e-153 546.2 489 57.7
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 2.5e-153 546.2 472 58.3
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.5e-150 537.0 472 58.1
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.5e-150 537.0 472 58.1
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 1.3e-149 533.9 472 56.8
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 1.7e-149 533.5 476 57.6
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 1.7e-149 533.5 476 57.6
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 4.3e-145 518.8 470 55.3
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 7.3e-145 518.1 378 66.4
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 8.9e-143 511.1 472 54.9
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 2.6e-142 509.6 398 65.8
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 7.5e-142 508.1 472 54.4
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.7e-141 506.9 383 64.2
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 1.8e-140 503.4 381 64.0
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 3.2e-140 502.7 398 61.6
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.5e-137 493.8 473 54.8
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 9.5e-137 491.1 471 56.1
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.4e-135 487.3 474 55.3
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 1.8e-135 486.9 388 60.6
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 5.2e-135 485.3 474 51.7
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 3.2e-132 476.1 482 50.4
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.0e-130 471.1 401 61.6
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 2.5e-129 466.5 480 51.0
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 6.2e-128 461.8 471 52.2
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 6.2e-128 461.8 478 51.0
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 6.2e-128 461.8 478 51.0
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 6.2e-128 461.8 478 51.0
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.1e-127 461.1 471 53.3
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 5.2e-127 458.8 478 50.8
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 5.1e-122 442.2 473 50.5
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.6e-120 437.2 493 48.3
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 1.2e-118 431.0 488 48.2
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 6.4e-117 425.2 347 60.8
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 1.9e-113 413.7 481 48.2
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 2.8e-112 409.8 445 49.4
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 6.2e-112 408.7 448 50.2
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 1.2e-102 377.9 308 62.3
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 4.2e-100 369.4 306 60.5
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 1.6e-99 367.5 280 66.4
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 2.3e-98 363.6 479 44.7
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.3e-90 337.0 378 50.0
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 1.1e-89 334.7 400 47.8
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 6.2e-88 328.9 475 38.9
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 6.2e-88 328.9 476 39.7
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.4e-86 323.2 465 39.6
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.0e-85 321.6 470 40.4
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 9.3e-84 315.1 479 41.5
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 9.3e-84 315.1 245 62.0
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 6.0e-83 312.4 474 38.6
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 1.9e-81 307.4 457 38.7
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.6e-75 286.6 217 67.7
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.8e-72 276.9 240 59.2
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 2.8e-72 276.9 311 50.5
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.4e-62 243.4 145 79.3
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 6.3e-56 222.6 516 31.2
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 6.7e-50 202.6 546 29.1
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 2.4e-47 194.1 177 55.9
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 4.5e-30 136.7 529 27.8
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 5.9e-30 136.3 93 72.0
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.1e-27 127.9 170 42.9
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 4.9e-24 116.7 133 43.6
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 3.2e-23 114.0 79 67.1
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 2.5e-12 77.8 105 40.0
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.3e-08 65.5 420 23.1
SEGI_33750 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 2.9e-08 64.3 96 41.7
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 5.4e-07 60.1 100 35.0
CSS0005517 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.5e-06 57.4 33 81.8


User provided reference genes

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