Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 3.5e-126 454.9 220 100.0
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 1.0e-77 293.9 154 94.8
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 1.6e-62 243.4 170 70.6
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 2.4e-58 229.6 144 77.1
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 3.8e-56 222.2 153 69.9
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.8e-45 186.8 151 60.9
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 2.0e-44 183.3 152 63.8
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 2.6e-44 183.0 184 52.2
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.7e-43 180.3 151 59.6
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 2.2e-43 179.9 154 59.7
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 1.1e-42 177.6 183 50.8
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 2.4e-42 176.4 194 50.5
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 5.9e-41 171.8 184 49.5
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.7e-40 170.2 170 51.8
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 8.5e-40 167.9 157 56.7
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 8.5e-40 167.9 184 48.9
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 8.5e-40 167.9 184 48.9
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 5.5e-39 165.2 153 53.6
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 1.6e-38 163.7 149 57.0
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 8.0e-38 161.4 158 56.3
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.4e-37 160.6 153 58.8
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.8e-37 160.2 151 57.6
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.8e-37 160.2 158 53.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 2.3e-37 159.8 154 57.1
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 4.0e-37 159.1 176 51.7
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 1.2e-36 157.5 153 54.9
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 1.2e-36 157.5 181 46.4
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 2.0e-36 156.8 152 55.3
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 2.0e-36 156.8 149 53.7
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 2.6e-36 156.4 157 51.0
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 3.4e-36 156.0 157 52.2
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 3.4e-36 156.0 158 53.8
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 3.4e-36 156.0 155 51.0
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 5.7e-36 155.2 175 48.0
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 9.8e-36 154.5 155 51.0
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 3.7e-35 152.5 153 52.9
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 6.3e-35 151.8 148 52.0
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 8.3e-35 151.4 165 52.1
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 8.3e-35 151.4 151 51.7
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 1.8e-34 150.2 154 53.2
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 4.1e-34 149.1 187 46.0
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.2e-33 147.5 146 52.1
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 1.2e-33 147.5 198 43.9
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 4.5e-33 145.6 191 45.5
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 4.5e-33 145.6 190 45.3
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 7.7e-33 144.8 147 51.0
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.7e-32 143.7 154 50.6
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.7e-32 143.7 157 50.3
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.2e-32 143.3 157 52.9
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 3.8e-32 142.5 190 43.2
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 6.5e-32 141.7 152 48.0
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 8.5e-32 141.4 126 56.3
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 8.5e-32 141.4 190 42.6
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.1e-31 141.0 152 48.7
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-31 140.6 157 49.7
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.5e-31 140.6 189 42.3
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.9e-31 140.2 126 56.3
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.9e-31 140.2 197 40.6
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.9e-31 140.2 154 52.6
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 5.5e-31 138.7 149 51.7
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 5.5e-31 138.7 203 41.9
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.5e-31 138.7 152 48.0
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 5.5e-31 138.7 155 48.4
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 7.2e-31 138.3 161 49.1
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 9.5e-31 137.9 148 50.7
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 3.6e-30 136.0 148 50.0
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 6.1e-30 135.2 165 44.8
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 6.1e-30 135.2 154 49.4
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.0e-29 134.4 154 47.4
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.3e-29 133.3 154 46.8
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.3e-29 133.3 159 48.4
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 4.0e-29 132.5 149 51.7
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 5.2e-29 132.1 189 43.4
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 6.8e-29 131.7 160 48.1
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 8.8e-29 131.3 148 50.7
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 2.0e-28 130.2 160 48.1
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.0e-28 130.2 149 48.3
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 3.4e-28 129.4 157 43.9
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 7.5e-28 128.3 147 48.3
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 7.5e-28 128.3 161 46.6
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 1.7e-27 127.1 201 38.8
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.7e-27 127.1 218 38.5
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.8e-27 126.3 216 38.4
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 3.7e-27 125.9 154 46.8
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 4.9e-27 125.6 196 40.3
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.1e-26 124.4 191 38.2
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.1e-26 124.4 100 58.0
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 5.4e-26 122.1 199 36.2
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 9.2e-26 121.3 158 45.6
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 2.0e-25 120.2 189 40.2
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 2.0e-25 120.2 189 40.2
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 2.0e-25 120.2 189 39.7
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 2.7e-25 119.8 191 38.7
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.5e-25 119.4 147 47.6
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 7.8e-25 118.2 192 41.1
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 2.9e-24 116.3 147 46.3
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.9e-24 116.3 147 46.3
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.9e-23 113.6 155 44.5
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 2.5e-23 113.2 150 41.3
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 2.8e-22 109.8 216 33.8
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.8e-22 109.8 143 44.1
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 8.0e-22 108.2 153 41.8
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.4e-21 107.5 152 44.7
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.8e-21 107.1 147 43.5
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 4.4e-20 102.4 154 43.5
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 7.5e-20 101.7 190 38.4
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.9e-19 99.8 85 57.6
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.8e-18 97.1 119 46.2
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.4e-18 96.7 167 38.3
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.7e-17 93.2 146 39.7
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.5e-17 92.8 167 39.5
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 4.6e-17 92.4 163 39.3
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 4.6e-17 92.4 67 62.7
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 7.8e-17 91.7 150 39.3
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.3e-16 90.9 146 39.0
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.3e-16 90.9 168 38.1
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 1.7e-16 90.5 163 38.7
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.7e-16 90.5 122 39.3
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.3e-16 90.1 157 37.6
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.0e-16 89.7 147 40.1
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 6.6e-16 88.6 146 39.0
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.5e-15 87.4 169 37.9
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 5.6e-15 85.5 106 48.1
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 9.5e-15 84.7 156 34.6
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 9.5e-15 84.7 146 37.7
QL01p028728 Quercus lobata HOM05D001295 ORTHO05D005319 2.1e-14 83.6 61 68.9
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.3e-13 80.1 147 34.0
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 3.1e-13 79.7 150 31.3
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.2e-13 79.0 65 56.9
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 9.8e-12 74.7 84 42.9
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 2.2e-11 73.6 91 42.9
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 8.3e-11 71.6 123 39.8
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 8.3e-11 71.6 139 31.7
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-10 71.2 81 43.2
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 4.6e-09 65.9 89 42.7
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 1.0e-08 64.7 191 27.7
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.2e-06 57.8 54 44.4


User provided reference genes

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