Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01426 Corylus avellana HOM05D001196 ORTHO05D005911 3.6e-38 161.0 76 100.0
Lj3g0006119 Lotus japonicus HOM05D001196 ORTHO05D005911 1.6e-14 82.4 48 72.9
Lalb_Chr24g0396661 Lupinus albus HOM05D001196 ORTHO05D005911 1.1e-13 79.7 48 77.1
Glyma.13G346200 Glycine max HOM05D001196 ORTHO05D005911 1.4e-13 79.3 44 79.5
Glyma.15G028000 Glycine max HOM05D001196 ORTHO05D005911 1.4e-13 79.3 44 77.3
Prupe.1G200000 Prunus persica HOM05D001196 ORTHO05D005911 4.0e-13 77.8 49 77.6
Manes.11G126700 Manihot esculenta HOM05D001196 ORTHO05D005911 8.9e-13 76.6 44 77.3
Atru.chr4.1299 Acer truncatum HOM05D001196 ORTHO05D005911 1.5e-12 75.9 48 75.0
Lj3A109T10 Lonicera japonica HOM05D001196 ORTHO05D005911 5.8e-12 73.9 48 75.0
Lj3A116G12 Lonicera japonica HOM05D001196 ORTHO05D005911 5.8e-12 73.9 48 75.0
MELO3C017792.2 Cucumis melo HOM05D001196 ORTHO05D005911 7.6e-12 73.6 48 70.8
CsaV3_4G002540 Cucumis sativus L. HOM05D001196 ORTHO05D005911 7.6e-12 73.6 48 70.8
MD04G1046500 Malus domestica HOM05D001196 ORTHO05D005911 7.6e-12 73.6 49 73.5
Dinv05090 Davidia involucrata HOM05D001196 ORTHO05D005911 1.3e-11 72.8 48 77.1
Sed0017758 Sechium edule HOM05D001196 ORTHO05D005911 1.3e-11 72.8 43 76.7
Thecc.04G172200 Theobroma cacao HOM05D001196 ORTHO05D005911 1.3e-11 72.8 56 67.9
Lalb_Chr14g0372601 Lupinus albus HOM05D001196 ORTHO05D005911 2.2e-11 72.0 43 74.4
VMungo1080G0844 Vigna mungo HOM05D001196 ORTHO05D005911 2.9e-11 71.6 38 76.3
Sabra07G0107900 Salix brachista HOM05D001196 ORTHO05D005911 4.9e-11 70.9 45 73.3
Sabra07G0119700 Salix brachista HOM05D001196 ORTHO05D005911 4.9e-11 70.9 45 73.3
Phvul.005G155000 Phaseolus vulgaris HOM05D001196 ORTHO05D005911 6.4e-11 70.5 39 76.9
CiPaw.01G095000 Carya illinoinensis HOM05D001196 ORTHO05D005911 1.1e-10 69.7 43 81.4
Cc03_g12480 Coffea canephora HOM05D001196 ORTHO05D005911 1.1e-10 69.7 45 77.8
Ca_01241_v3 Cicer arietinum L. HOM05D001196 ORTHO05D005911 1.4e-10 69.3 36 80.6
Hma1.2p1_0487F.1_g163530 Hydrangea macrophylla HOM05D001196 ORTHO05D005911 1.4e-10 69.3 43 79.1
BraA04t18738Z Brassica rapa HOM05D001196 ORTHO05D005911 1.9e-10 68.9 45 68.9
GSVIVG01002818001 Vitis vinifera HOM05D001196 ORTHO05D005911 1.9e-10 68.9 38 76.3
HanXRQChr03g0089131 Helianthus annuus HOM05D001196 ORTHO05D005911 3.2e-10 68.2 44 70.5
QL10p051768 Quercus lobata HOM05D001196 ORTHO05D005911 3.2e-10 68.2 49 71.4
TPR.G6502 Trifolium pratense HOM05D001196 ORTHO05D005911 3.2e-10 68.2 37 78.4
THA.LOC104802319 Tarenaya hassleriana HOM05D001196 ORTHO05D005911 4.1e-10 67.8 45 64.4
Aa31LG10G13890 Aethionema arabicum HOM05D001196 ORTHO05D005911 5.4e-10 67.4 43 69.8
TAR362G0635 Trochodendron aralioides HOM05D001196 ORTHO05D005911 5.4e-10 67.4 42 76.2
Dinv44162 Davidia involucrata HOM05D001196 ORTHO05D005911 7.1e-10 67.0 43 74.4
Psat5g290800 Pisum sativum HOM05D001196 ORTHO05D005911 7.1e-10 67.0 37 75.7
Sp4g25580 Schrenkiella parvula HOM05D001196 ORTHO05D005911 7.1e-10 67.0 41 70.7
TWI15G0546 Tripterygium wilfordii HOM05D001196 ORTHO05D005911 9.2e-10 66.6 40 70.0
A04p32740 Brassica napus HOM05D001196 ORTHO05D005911 1.6e-09 65.9 43 65.1
CAN.G316.12 Capsicum annuum HOM05D001196 ORTHO05D005911 2.1e-09 65.5 43 74.4
Nitab4.5_0006380g0010 Nicotiana tabacum HOM05D001196 ORTHO05D005911 2.1e-09 65.5 43 74.4
arahy.Tifrunner.gnm1.ann1.DI4MXM Arachis hypogaea HOM05D001196 ORTHO05D005911 2.7e-09 65.1 37 78.4
arahy.Tifrunner.gnm1.ann1.KT0MEF Arachis hypogaea HOM05D001196 ORTHO05D005911 2.7e-09 65.1 37 78.4
COL.COLO4_06574 Corchorus olitorius HOM05D001196 ORTHO05D005911 2.7e-09 65.1 60 58.3
ECA240G1795 Erigeron canadensis HOM05D001196 ORTHO05D005911 3.5e-09 64.7 44 68.2
Potri.007G132900 Populus trichocarpa HOM05D001196 ORTHO05D005911 3.5e-09 64.7 44 70.5
Sopen03g012120 Solanum pennellii HOM05D001196 ORTHO05D005911 4.6e-09 64.3 43 72.1
MSTRG.9746 Avicennia marina HOM05D001196 ORTHO05D005911 6.0e-09 63.9 48 66.7
Thhalv10001327m.g Eutrema salsugineum HOM05D001196 ORTHO05D005911 6.0e-09 63.9 39 66.7
AL4G42240 Arabidopsis lyrata HOM05D001196 ORTHO05D005911 7.8e-09 63.5 41 68.3
BcaB06g29318 Brassica carinata HOM05D001196 ORTHO05D005911 7.8e-09 63.5 41 68.3
BcaC02g07175 Brassica carinata HOM05D001196 ORTHO05D005911 7.8e-09 63.5 41 68.3
BcaC02g12388 Brassica carinata HOM05D001196 ORTHO05D005911 7.8e-09 63.5 41 68.3
BolC4t22083H Brassica oleracea HOM05D001196 ORTHO05D005911 7.8e-09 63.5 41 68.3
BraA05t19368Z Brassica rapa HOM05D001196 ORTHO05D005911 7.8e-09 63.5 41 68.3
Eucgr.H00337 Eucalyptus grandis HOM05D001196 ORTHO05D005911 7.8e-09 63.5 43 72.1
Duzib151G0336 Durio zibethinus HOM05D001196 ORTHO05D005911 1.0e-08 63.2 42 71.4
CANSAT78G2205 Cannabis sativa HOM05D001196 ORTHO05D005911 1.7e-08 62.4 46 69.6
Lsat_1_v5_gn_3_111301 Lactuca sativa HOM05D001196 ORTHO05D005911 2.3e-08 62.0 43 65.1
SGA_v2.0_scaffold283G46997 Striga asiatica HOM05D001196 ORTHO05D005911 2.3e-08 62.0 43 67.4
Peaxi162Scf00058g01217 Petunia axillaris HOM05D001196 ORTHO05D005911 5.1e-08 60.8 43 74.4
AT2G43490 Arabidopsis thaliana HOM05D001196 ORTHO05D005911 6.6e-08 60.5 39 64.1
BcaB02g08936 Brassica carinata HOM05D001196 ORTHO05D005911 6.6e-08 60.5 39 64.1
A05p03800 Brassica napus HOM05D001196 ORTHO05D005911 6.6e-08 60.5 39 64.1
C04p04500 Brassica napus HOM05D001196 ORTHO05D005911 6.6e-08 60.5 39 64.1
C04p70450 Brassica napus HOM05D001196 ORTHO05D005911 6.6e-08 60.5 39 64.1
BolC4t28549H Brassica oleracea HOM05D001196 ORTHO05D005911 6.6e-08 60.5 39 64.1
Carub.0004s2595 Capsella rubella HOM05D001196 ORTHO05D005911 6.6e-08 60.5 39 64.1
CARHR138580 Cardamine hirsuta HOM05D001196 ORTHO05D005911 6.6e-08 60.5 39 64.1
Sp5g03580 Schrenkiella parvula HOM05D001196 ORTHO05D005911 6.6e-08 60.5 43 58.1
Migut.G01291 Erythranthe guttata HOM05D001196 ORTHO05D005911 8.7e-08 60.1 43 65.1
Hund03184 Selenicereus undatus HOM05D001196 ORTHO05D005911 8.7e-08 60.1 35 74.3
Gorai.011G138800 Gossypium raimondii HOM05D001196 ORTHO05D005911 1.1e-07 59.7 53 54.7
Potri.017G023200 Populus trichocarpa HOM05D001196 ORTHO05D005911 1.5e-07 59.3 44 61.4
BcaB06g29316 Brassica carinata HOM05D001196 ORTHO05D005911 1.9e-07 58.9 39 61.5
Ciclev10018989m.g Citrus clementina HOM05D001196 ORTHO05D005911 1.9e-07 58.9 34 73.5
BcaC07g40467 Brassica carinata HOM05D001196 ORTHO05D005911 4.3e-07 57.8 42 54.8
Gohir.D02G111200 Gossypium hirsutum HOM05D001196 ORTHO05D005911 5.6e-07 57.4 44 63.6
Gorai.005G126100 Gossypium raimondii HOM05D001196 ORTHO05D005911 5.6e-07 57.4 44 63.6
Nn7g37564 Nelumbo nucifera HOM05D001196 ORTHO05D005911 7.3e-07 57.0 43 67.4
A09p51840 Brassica napus HOM05D001196 ORTHO05D005911 9.6e-07 56.6 42 54.8
C08p34560 Brassica napus HOM05D001196 ORTHO05D005911 9.6e-07 56.6 42 54.8
BolC8t51058H Brassica oleracea HOM05D001196 ORTHO05D005911 9.6e-07 56.6 42 54.8
BraA09t40619Z Brassica rapa HOM05D001196 ORTHO05D005911 9.6e-07 56.6 42 54.8
CARHR169960 Cardamine hirsuta HOM05D001196 ORTHO05D005911 9.6e-07 56.6 45 57.8
DCAR_029914 Daucus carota HOM05D001196 ORTHO05D005911 9.6e-07 56.6 47 63.8
Gohir.D10G125800 Gossypium hirsutum HOM05D001196 ORTHO05D005911 9.6e-07 56.6 43 62.8
Nn1g09532 Nelumbo nucifera HOM05D001196 ORTHO05D005911 1.2e-06 56.2 38 68.4
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 2.1e-06 55.5 46 63.0
PSO837G0034 Papaver somniferum HOM05D001196 ORTHO05D005911 3.6e-06 54.7 39 66.7
Aa31LG1G25230 Aethionema arabicum HOM05D001196 ORTHO05D005911 4.7e-06 54.3 39 56.4
Gohir.A02G092901 Gossypium hirsutum HOM05D001196 ORTHO05D005911 8.1e-06 53.5 44 61.4


User provided reference genes

Program Settings