Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 0.0e+00 1650.2 840 100.0
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 0.0e+00 1105.1 637 88.4
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 9.3e-204 714.5 626 62.5
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 2.6e-198 696.4 566 68.6
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 5.2e-154 549.3 611 51.9
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 9.8e-153 545.0 623 52.0
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.3e-152 544.7 626 50.6
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 3.4e-137 493.4 647 48.1
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 6.0e-134 482.6 623 46.1
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 8.6e-133 478.8 635 46.3
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 3.1e-130 470.3 648 44.3
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 9.2e-127 458.8 623 44.3
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.6e-123 448.0 623 44.3
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 4.7e-123 446.4 678 43.1
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 1.1e-122 445.3 637 42.9
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 4.0e-122 443.4 644 43.9
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 1.7e-120 438.0 625 43.5
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 2.2e-120 437.6 629 43.1
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 3.8e-120 436.8 615 43.4
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 1.1e-119 435.3 612 44.9
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 5.1e-117 426.4 638 42.0
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 1.5e-116 424.9 629 42.4
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 3.3e-116 423.7 598 44.6
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 5.6e-116 422.9 626 42.5
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 9.6e-116 422.2 645 42.0
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 1.6e-115 421.4 609 42.4
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 1.8e-114 417.9 619 42.6
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 2.4e-114 417.5 640 43.0
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 6.9e-114 416.0 623 40.9
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.2e-113 415.2 632 42.4
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 2.2e-112 411.0 643 41.5
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 2.2e-112 411.0 603 44.4
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.4e-111 407.5 623 43.3
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 4.2e-111 406.8 623 41.6
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.1e-110 404.4 629 42.0
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 3.5e-110 403.7 625 43.4
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 7.9e-110 402.5 625 43.5
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 1.0e-109 402.1 640 39.4
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 1.3e-109 401.7 637 41.9
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.8e-109 401.4 630 41.7
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.5e-108 397.5 632 41.6
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.3e-108 397.1 625 42.9
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.6e-107 394.8 625 41.8
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 2.6e-105 387.5 612 39.5
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 9.9e-105 385.6 632 42.1
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 1.3e-104 385.2 638 42.8
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 1.7e-104 384.8 644 40.7
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 4.9e-104 383.3 628 41.2
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.9e-104 383.3 650 39.1
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 1.1e-103 382.1 632 41.3
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 1.1e-103 382.1 632 41.3
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 4.2e-103 380.2 650 38.9
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 3.5e-102 377.1 608 40.5
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.5e-102 377.1 527 43.8
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 4.6e-102 376.7 590 40.5
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 6.0e-102 376.3 649 37.9
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 6.0e-102 376.3 627 39.4
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 3.9e-101 373.6 651 40.9
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 8.7e-101 372.5 641 40.4
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 1.3e-99 368.6 650 41.8
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 4.9e-96 356.7 637 37.8
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 9.3e-95 352.4 590 42.9
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 6.0e-94 349.7 588 42.3
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 9.0e-90 335.9 624 38.3
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.1e-87 328.9 648 36.4
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 9.3e-87 325.9 622 36.5
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 1.2e-86 325.5 619 38.0
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 2.7e-86 324.3 615 36.7
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 7.9e-86 322.8 621 36.2
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 1.0e-85 322.4 646 36.1
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.3e-85 322.0 602 36.4
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 1.8e-85 321.6 622 36.2
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.5e-84 317.8 604 36.6
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 3.3e-84 317.4 643 36.5
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 3.3e-84 317.4 623 37.2
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 4.3e-84 317.0 622 36.0
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.8e-82 311.6 639 37.1
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 4.5e-81 307.0 680 35.1
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 5.9e-81 306.6 681 35.7
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.4e-79 302.0 636 35.8
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 1.9e-79 301.6 644 35.6
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 1.6e-78 298.5 625 35.0
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 1.6e-78 298.5 646 34.7
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 3.6e-78 297.4 590 37.3
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 3.6e-78 297.4 365 47.7
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 7.9e-78 296.2 294 55.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.1e-76 292.4 583 38.1
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 2.4e-74 284.6 522 39.3
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 6.9e-74 283.1 625 35.2
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.5e-73 282.0 614 36.2
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 7.2e-71 273.1 613 33.8
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 7.9e-70 269.6 596 33.1
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 1.1e-66 259.2 362 43.9
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 4.2e-63 247.3 295 46.4
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.3e-59 235.7 555 35.9
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.1e-58 232.6 268 49.3
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 1.8e-58 231.9 385 39.0
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 1.2e-57 229.2 592 31.4
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 4.4e-52 210.7 369 37.7
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 1.8e-45 188.7 340 37.6
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 6.8e-45 186.8 378 34.4
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 2.2e-43 181.8 637 27.8
Haze_21456 Corylus avellana HOM05D006730 ORTHO05D008189 8.3e-35 153.3 136 63.2
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.7e-33 148.3 343 36.2
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.3e-32 146.0 397 33.8
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 1.6e-30 139.0 295 33.2
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 4.4e-28 131.0 371 27.5
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 1.7e-27 129.0 137 60.6
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 2.9e-27 128.3 348 29.3
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 9.2e-26 123.2 260 35.8
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 5.6e-23 114.0 404 26.0
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 4.0e-21 107.8 246 29.7
Haze_19124 Corylus avellana HOM05D007659 ORTHO05D009227 2.0e-20 105.5 71 76.1
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 1.2e-14 86.3 335 25.1
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.1e-13 83.2 131 38.9
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.4e-13 82.0 84 47.6
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 3.2e-10 71.6 265 26.4
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 1.7e-08 65.9 86 45.3
Pp3c1_41270 Physcomitrium patens HOM05D026854 ORTHO05D008189 1.1e-07 63.2 237 24.1


User provided reference genes

Program Settings