Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01381 Corylus avellana HOM05D005028 ORTHO05D006028 7.1e-223 776.9 390 100.0
Haze_15525 Corylus avellana HOM05D005028 ORTHO05D006028 4.6e-89 332.4 175 96.0
Cfa003905 Carpinus fangiana HOM05D005028 ORTHO05D006028 5.1e-88 328.9 175 94.3
CiPaw.02G032200 Carya illinoinensis HOM05D005028 ORTHO05D006028 7.9e-73 278.5 189 75.1
QL04p053913 Quercus lobata HOM05D005028 ORTHO05D006028 1.1e-66 258.1 176 74.4
CANSAT56G0390 Cannabis sativa HOM05D005028 ORTHO05D006028 2.0e-63 247.3 180 69.4
Prupe.2G172500 Prunus persica HOM05D005028 ORTHO05D006028 4.8e-62 242.7 176 70.5
TWI23G0157 Tripterygium wilfordii HOM05D005028 ORTHO05D006028 1.4e-61 241.1 177 68.9
GSVIVG01026950001 Vitis vinifera HOM05D005028 ORTHO05D006028 1.8e-61 240.7 176 69.3
MD07G1135200 Malus domestica HOM05D005028 ORTHO05D006028 1.2e-60 238.0 176 69.9
TAR374G1129 Trochodendron aralioides HOM05D005028 ORTHO05D006028 2.0e-60 237.3 176 68.2
Dinv32494 Davidia involucrata HOM05D005028 ORTHO05D006028 4.5e-60 236.1 176 66.5
MELO3C006103.2 Cucumis melo HOM05D005028 ORTHO05D006028 2.2e-59 233.8 170 65.3
Hma1.2p1_0780F.1_g216740 Hydrangea macrophylla HOM05D005028 ORTHO05D006028 3.8e-59 233.0 182 67.6
ClCG05G001460 Citrullus lanatus HOM05D005028 ORTHO05D006028 6.5e-59 232.3 168 66.1
RcHm_v2.0_Chr1g0356151 Rosa chinensis HOM05D005028 ORTHO05D006028 6.5e-59 232.3 176 67.0
Nn1g01568 Nelumbo nucifera HOM05D005028 ORTHO05D006028 1.1e-58 231.5 176 64.8
MD01G1065300 Malus domestica HOM05D005028 ORTHO05D006028 1.5e-58 231.1 176 67.0
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 3.2e-58 229.9 169 65.1
TAR375G0288 Trochodendron aralioides HOM05D005028 ORTHO05D006028 1.6e-57 227.6 176 65.3
FAN01G1655 Fragaria x ananassa HOM05D005028 ORTHO05D006028 8.0e-57 225.3 176 64.2
FvH4_7g14630 Fragaria vesca HOM05D005028 ORTHO05D006028 1.8e-56 224.2 176 64.2
FAN06G2873 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.8e-56 224.2 176 64.2
Actinidia10042 Actinidia chinensis HOM05D005028 ORTHO05D006028 2.3e-56 223.8 177 63.8
Sed0007874 Sechium edule HOM05D005028 ORTHO05D006028 2.3e-56 223.8 175 60.0
FAN03G1762 Fragaria x ananassa HOM05D005028 ORTHO05D006028 4.0e-56 223.0 176 63.6
FAN06G0569 Fragaria x ananassa HOM05D005028 ORTHO05D006028 6.8e-56 222.2 176 63.1
FAN10G3452 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.2e-55 221.5 176 63.6
Manes.05G033100 Manihot esculenta HOM05D005028 ORTHO05D006028 2.6e-55 220.3 176 63.6
FAN10G4091 Fragaria x ananassa HOM05D005028 ORTHO05D006028 3.4e-55 219.9 176 63.1
QL04p053899 Quercus lobata HOM05D005028 ORTHO05D006028 7.5e-55 218.8 180 60.0
Lj7A510T39 Lonicera japonica HOM05D005028 ORTHO05D006028 1.3e-54 218.0 173 62.4
Nitab4.5_0002811g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 2.8e-54 216.9 172 60.5
Solyc10g012400.3 Solanum lycopersicum HOM05D005028 ORTHO05D006028 2.8e-54 216.9 172 59.3
Sopen10g006230 Solanum pennellii HOM05D005028 ORTHO05D006028 2.8e-54 216.9 172 59.3
Sc23g0002800 Simmondsia chinensis HOM05D005028 ORTHO05D006028 3.7e-54 216.5 170 60.0
Peaxi162Scf00008g02424 Petunia axillaris HOM05D005028 ORTHO05D006028 1.4e-53 214.5 173 61.3
Actinidia20894 Actinidia chinensis HOM05D005028 ORTHO05D006028 5.4e-53 212.6 178 60.7
EL10Ac1g00399 Beta vulgaris HOM05D005028 ORTHO05D006028 5.4e-53 212.6 176 59.7
PGSC0003DMG400006503 Solanum tuberosum HOM05D005028 ORTHO05D006028 5.4e-53 212.6 169 58.6
Thecc.01G357500 Theobroma cacao HOM05D005028 ORTHO05D006028 1.2e-52 211.5 156 66.0
vmacro13267 Vaccinium macrocarpon HOM05D005028 ORTHO05D006028 1.2e-52 211.5 177 61.6
Lalb_Chr04g0253811 Lupinus albus HOM05D005028 ORTHO05D006028 7.7e-52 208.8 176 60.8
VMungo1383G1301 Vigna mungo HOM05D005028 ORTHO05D006028 7.7e-52 208.8 168 60.7
CAN.G116.15 Capsicum annuum HOM05D005028 ORTHO05D006028 1.0e-51 208.4 175 56.6
HanXRQChr16g0522391 Helianthus annuus HOM05D005028 ORTHO05D006028 1.0e-51 208.4 186 59.7
Potri.014G086200 Populus trichocarpa HOM05D005028 ORTHO05D006028 1.0e-51 208.4 179 60.9
Atru.chr5.513 Acer truncatum HOM05D005028 ORTHO05D006028 1.3e-51 208.0 175 60.0
Ah.05g180490 Amaranthus hybridus HOM05D005028 ORTHO05D006028 1.7e-51 207.6 169 58.0
Duzib138G1785 Durio zibethinus HOM05D005028 ORTHO05D006028 2.2e-51 207.2 158 63.3
AUR62004377 Chenopodium quinoa HOM05D005028 ORTHO05D006028 2.9e-51 206.8 156 62.2
THA.LOC104802036 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 5.0e-51 206.1 158 62.0
AUR62022583 Chenopodium quinoa HOM05D005028 ORTHO05D006028 6.5e-51 205.7 156 62.2
Oeu052955.1 Olea europaea HOM05D005028 ORTHO05D006028 6.5e-51 205.7 181 59.1
Ca_07933_v3 Cicer arietinum L. HOM05D005028 ORTHO05D006028 1.9e-50 204.1 176 59.1
Nitab4.5_0000386g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 2.5e-50 203.8 172 58.7
Psat3g107720 Pisum sativum HOM05D005028 ORTHO05D006028 2.5e-50 203.8 175 60.0
Phvul.008G061400 Phaseolus vulgaris HOM05D005028 ORTHO05D006028 4.2e-50 203.0 168 58.9
Eucgr.E00119 Eucalyptus grandis HOM05D005028 ORTHO05D006028 7.2e-50 202.2 179 59.2
Lj1g0018179 Lotus japonicus HOM05D005028 ORTHO05D006028 7.2e-50 202.2 176 56.8
Glyma.18G234400 Glycine max HOM05D005028 ORTHO05D006028 1.2e-49 201.4 176 58.5
Cc02_g38190 Coffea canephora HOM05D005028 ORTHO05D006028 1.6e-49 201.1 162 59.3
Sabra14G0062500 Salix brachista HOM05D005028 ORTHO05D006028 2.1e-49 200.7 176 59.7
arahy.Tifrunner.gnm1.ann1.US4SCG Arachis hypogaea HOM05D005028 ORTHO05D006028 2.7e-49 200.3 176 57.4
PGR042G1182 Punica granatum HOM05D005028 ORTHO05D006028 2.7e-49 200.3 161 62.1
ECA234G2903 Erigeron canadensis HOM05D005028 ORTHO05D006028 6.1e-49 199.1 176 56.8
Lsat_1_v5_gn_4_35880 Lactuca sativa HOM05D005028 ORTHO05D006028 8.0e-49 198.7 180 56.1
TPR.G37810 Trifolium pratense HOM05D005028 ORTHO05D006028 1.0e-48 198.4 176 57.4
arahy.Tifrunner.gnm1.ann1.EZF1CG Arachis hypogaea HOM05D005028 ORTHO05D006028 1.8e-48 197.6 176 56.8
Cpa.g.sc11.21 Carica papaya HOM05D005028 ORTHO05D006028 1.8e-48 197.6 169 60.9
MBI18_g02833_MAGBIO Magnolia biondii HOM05D005028 ORTHO05D006028 1.8e-48 197.6 174 60.3
arahy.Tifrunner.gnm1.ann1.C7F7IC Arachis hypogaea HOM05D005028 ORTHO05D006028 3.0e-48 196.8 176 56.8
PSO210G4593 Papaver somniferum HOM05D005028 ORTHO05D006028 3.0e-48 196.8 182 57.1
PSO832G0747 Papaver somniferum HOM05D005028 ORTHO05D006028 3.0e-48 196.8 182 57.7
Gohir.D07G147300 Gossypium hirsutum HOM05D005028 ORTHO05D006028 4.0e-48 196.4 175 57.1
Rhsim07G0013700 Rhododendron simsii HOM05D005028 ORTHO05D006028 4.0e-48 196.4 165 60.6
DCAR_015106 Daucus carota HOM05D005028 ORTHO05D006028 6.8e-48 195.7 176 56.2
Medtr7g077890 Medicago truncatula HOM05D005028 ORTHO05D006028 8.8e-48 195.3 176 56.8
THA.LOC104817298 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 8.8e-48 195.3 176 55.1
Glyma.09G258300 Glycine max HOM05D005028 ORTHO05D006028 1.2e-47 194.9 176 57.4
Gohir.A07G141900 Gossypium hirsutum HOM05D005028 ORTHO05D006028 1.2e-47 194.9 185 54.6
unitig_26.g9301 Utricularia gibba HOM05D000773 ORTHO05D006028 1.5e-47 194.5 181 56.4
Nitab4.5_0000583g0210 Nicotiana tabacum HOM05D005028 ORTHO05D006028 2.0e-47 194.1 158 58.9
Ciclev10022241m.g Citrus clementina HOM05D005028 ORTHO05D006028 1.3e-46 191.4 196 50.5
DCAR_007443 Daucus carota HOM05D005028 ORTHO05D006028 1.7e-46 191.0 168 57.1
SGA_v2.0_scaffold95G28829 Striga asiatica HOM05D005028 ORTHO05D006028 3.1e-45 186.8 181 54.1
ATR0680G399 Amborella trichopoda HOM05D005028 ORTHO05D006028 7.0e-45 185.7 164 56.7
Nitab4.5_0006018g0040 Nicotiana tabacum HOM05D005028 ORTHO05D006028 2.7e-44 183.7 159 57.9
Migut.B01770 Erythranthe guttata HOM05D005028 ORTHO05D006028 5.9e-44 182.6 164 54.9
Gorai.001G168500 Gossypium raimondii HOM05D005028 ORTHO05D006028 2.9e-43 180.3 206 48.5
SMO203G0053 Selaginella moellendorffii HOM05D005028 ORTHO05D006028 1.9e-42 177.6 175 54.3
AL4G45230 Arabidopsis lyrata HOM05D005028 ORTHO05D006028 4.3e-42 176.4 176 53.4
MSTRG.20842 Avicennia marina HOM05D005028 ORTHO05D006028 4.3e-42 176.4 175 54.3
HPP92_025966 Vanilla planifolia HOM05D005028 ORTHO05D006028 4.3e-42 176.4 153 56.9
A03p25430 Brassica napus HOM05D005028 ORTHO05D006028 1.2e-41 174.9 175 53.1
Thhalv10001635m.g Eutrema salsugineum HOM05D005028 ORTHO05D006028 1.2e-41 174.9 169 55.0
CARHR141270 Cardamine hirsuta HOM05D005028 ORTHO05D006028 2.8e-41 173.7 176 54.5
Lsat_1_v5_gn_7_18681 Lactuca sativa HOM05D005028 ORTHO05D006028 4.7e-41 172.9 176 51.1
CDE09G1157 Ceratophyllum demersum HOM05D005028 ORTHO05D006028 4.0e-40 169.9 179 49.7
Lsat_1_v5_gn_7_4161 Lactuca sativa HOM05D005028 ORTHO05D006028 4.0e-40 169.9 164 52.4
Carub.0004s2870 Capsella rubella HOM05D005028 ORTHO05D006028 5.2e-40 169.5 176 52.8
Aa31LG1G27410 Aethionema arabicum HOM05D005028 ORTHO05D006028 8.9e-40 168.7 175 50.3
Os03g0148300 Oryza sativa ssp. japonica HOM05D005028 ORTHO05D006028 8.9e-40 168.7 164 50.6
Sp4g28070 Schrenkiella parvula HOM05D005028 ORTHO05D006028 3.4e-39 166.8 176 52.3
COL.COLO4_12727 Corchorus olitorius HOM05D005028 ORTHO05D006028 2.2e-38 164.1 175 49.1
HanXRQChr06g0170181 Helianthus annuus HOM05D005028 ORTHO05D006028 2.2e-38 164.1 159 49.7
BcaC02g12158 Brassica carinata HOM05D005028 ORTHO05D006028 2.9e-38 163.7 169 51.5
BolC4t28699H Brassica oleracea HOM05D005028 ORTHO05D006028 2.9e-38 163.7 177 50.8
C04p72030 Brassica napus HOM05D005028 ORTHO05D006028 3.7e-38 163.3 177 50.8
Solyc01g094780.4 Solanum lycopersicum HOM05D005028 ORTHO05D006028 6.4e-38 162.5 158 50.0
AagrBONN_evm.TU.Sc2ySwM_228.1428 Anthoceros agrestis HOM05D005028 ORTHO05D006028 8.3e-38 162.2 157 51.6
Peaxi162Scf00020g00731 Petunia axillaris HOM05D005028 ORTHO05D006028 1.8e-37 161.0 159 51.6
A04p34210 Brassica napus HOM05D005028 ORTHO05D006028 2.4e-37 160.6 177 50.3
C03p30330 Brassica napus HOM05D005028 ORTHO05D006028 2.4e-37 160.6 176 50.0
BraA04t18882Z Brassica rapa HOM05D005028 ORTHO05D006028 2.4e-37 160.6 177 50.3
BolC3t15383H Brassica oleracea HOM05D005028 ORTHO05D006028 3.2e-37 160.2 176 49.4
Zm00001eb402990 Zea mays HOM05D005028 ORTHO05D006028 4.1e-37 159.8 157 50.3
Aqoxy7G00275 Aquilegia oxysepala HOM05D005028 ORTHO05D006028 1.2e-36 158.3 175 50.9
AT2G46000 Arabidopsis thaliana HOM05D005028 ORTHO05D006028 1.6e-36 157.9 176 49.4
PGSC0003DMG400000176 Solanum tuberosum HOM05D005028 ORTHO05D006028 4.6e-36 156.4 158 50.0
Zm00001eb003870 Zea mays HOM05D005028 ORTHO05D006028 7.8e-36 155.6 155 49.0
C04p06920 Brassica napus HOM05D005028 ORTHO05D006028 2.3e-35 154.1 175 48.6
BolC4t22313H Brassica oleracea HOM05D005028 ORTHO05D006028 2.3e-35 154.1 175 48.6
A05p05990 Brassica napus HOM05D005028 ORTHO05D006028 5.0e-35 152.9 175 48.0
BraA05t19562Z Brassica rapa HOM05D005028 ORTHO05D006028 5.0e-35 152.9 175 48.0
Mapoly0023s0066 Marchantia polymorpha HOM05D005028 ORTHO05D006028 1.0e-32 145.2 169 44.4
BraA03t11762Z Brassica rapa HOM05D005028 ORTHO05D006028 1.4e-32 144.8 155 52.3
SalBow3G2695 Salvia bowleyana HOM05D005028 ORTHO05D006028 1.4e-32 144.8 200 42.0
BcaC01g05100 Brassica carinata HOM05D005028 ORTHO05D006028 5.2e-32 142.9 140 52.1
RcHm_v2.0_Chr1g0356451 Rosa chinensis HOM05D005028 ORTHO05D006028 1.3e-30 138.3 108 63.0
Pp3c14_2680 Physcomitrium patens HOM05D005028 ORTHO05D006028 1.7e-30 137.9 157 47.8
CANSAT25G0788 Cannabis sativa HOM05D005028 ORTHO05D006028 1.0e-27 128.6 76 80.3
SEGI_06430 Sequoiadendron giganteum HOM05D005028 ORTHO05D006028 1.7e-27 127.9 123 54.5
Manes.01G255500 Manihot esculenta HOM05D005028 ORTHO05D006028 1.5e-26 124.8 170 45.3
HanXRQChr04g0121191 Helianthus annuus HOM05D005028 ORTHO05D006028 1.8e-24 117.9 125 46.4
Ciclev10006561m.g Citrus clementina HOM05D005028 ORTHO05D006028 8.9e-24 115.5 111 53.2
Cfa010782 Carpinus fangiana HOM05D005028 ORTHO05D006028 1.4e-21 108.2 57 91.2
BcaC02g07785 Brassica carinata HOM05D005028 ORTHO05D006028 1.7e-19 101.3 87 52.9
BraA08t32322Z Brassica rapa HOM05D005028 ORTHO05D006028 1.7e-19 101.3 102 49.0
A04p17020 Brassica napus HOM05D005028 ORTHO05D006028 5.1e-19 99.8 103 48.5
BcaB01g03242 Brassica carinata HOM05D005028 ORTHO05D006028 3.3e-18 97.1 173 37.6
Cfa015721 Carpinus fangiana HOM05D001945 ORTHO05D034171 1.4e-13 81.6 42 92.9
BcaC02g08371 Brassica carinata HOM05D005028 ORTHO05D006028 1.0e-11 75.5 64 53.1
C09p26600 Brassica napus HOM05D005028 ORTHO05D006028 6.6e-11 72.8 113 37.2
CBR_g3867 Chara braunii HOM05D005028 ORTHO05D006028 2.1e-09 67.8 132 34.8
MCO07G199 Micromonas commoda HOM05D005028 ORTHO05D006028 1.2e-07 62.0 162 26.5
Atru.chr3.1868 Acer truncatum HOM05D005028 ORTHO05D006028 2.6e-07 60.8 63 47.6
Atru.chr3.1882 Acer truncatum HOM05D005028 ORTHO05D006028 4.4e-07 60.1 63 47.6
ECA236G3403 Erigeron canadensis HOM05D005028 ORTHO05D006028 1.7e-06 58.2 85 41.2


User provided reference genes

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