Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 7.6e-206 720.3 377 100.0
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 5.3e-66 255.8 293 57.3
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 6.5e-64 248.8 299 52.5
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.3e-60 236.5 300 51.7
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 2.0e-57 227.3 298 49.7
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 5.0e-48 196.1 290 42.8
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 6.1e-46 189.1 291 43.6
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 8.0e-46 188.7 291 41.6
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.8e-45 187.6 293 43.0
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 3.0e-45 186.8 290 43.8
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 1.5e-44 184.5 291 43.6
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.4e-44 183.3 238 50.8
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 3.4e-44 183.3 305 41.0
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 4.4e-44 183.0 288 43.1
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 5.7e-44 182.6 290 43.1
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 7.5e-44 182.2 293 41.0
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.7e-43 181.0 292 40.4
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.7e-43 181.0 294 41.8
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 2.8e-43 180.3 283 42.0
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.7e-43 179.9 287 41.1
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.8e-42 177.6 291 41.2
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 3.1e-42 176.8 292 40.1
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 9.2e-42 175.3 290 42.4
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.2e-41 174.9 295 42.4
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.0e-41 174.1 238 48.3
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 4.5e-41 172.9 292 42.1
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.3e-40 171.4 290 41.7
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 8.6e-40 168.7 266 42.5
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.5e-39 167.9 270 42.6
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.3e-39 166.4 291 41.9
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 4.3e-39 166.4 291 41.9
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 3.6e-38 163.3 291 38.8
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 8.0e-38 162.2 292 41.1
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 4.4e-36 156.4 303 38.3
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 1.3e-35 154.8 291 38.8
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.7e-35 154.5 304 37.8
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.3e-35 152.1 267 41.6
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 5.4e-34 149.4 258 41.1
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.6e-33 147.9 224 42.9
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.6e-33 147.9 290 38.6
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.5e-33 146.7 281 38.4
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.0e-32 145.2 289 36.7
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 5.0e-32 142.9 257 37.4
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 6.6e-32 142.5 220 41.4
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.1e-31 141.7 262 38.9
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 4.3e-31 139.8 220 41.8
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 5.6e-31 139.4 293 34.8
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 5.6e-31 139.4 226 39.8
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 9.5e-31 138.7 210 42.9
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.8e-30 137.1 293 37.2
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 6.2e-30 136.0 252 37.7
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 6.2e-30 136.0 276 37.0
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.3e-29 134.0 277 36.5
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.3e-29 134.0 223 39.0
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.0e-29 133.3 290 35.9
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 4.4e-28 129.8 228 37.7
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.8e-28 129.4 238 40.8
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 9.8e-28 128.6 247 37.2
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 3.7e-27 126.7 244 37.7
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 1.4e-26 124.8 219 37.4
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.4e-26 124.0 231 37.2
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 5.4e-26 122.9 244 36.1
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 5.4e-26 122.9 244 36.1
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 7.0e-26 122.5 244 36.1
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 3.5e-25 120.2 244 35.2
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 4.6e-25 119.8 231 35.9
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 6.0e-25 119.4 216 37.5
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.0e-24 118.6 206 38.3
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 5.0e-24 116.3 216 36.1
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 5.0e-24 116.3 73 80.8
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 6.6e-24 115.9 230 34.3
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.5e-23 114.0 223 35.9
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.6e-22 111.3 137 51.1
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 8.1e-22 109.0 225 35.1
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.4e-21 108.2 76 72.4
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.4e-21 108.2 225 35.1
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.2e-20 105.1 69 76.8
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 8.3e-19 99.0 84 65.5
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 2.4e-18 97.4 136 44.1
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 7.1e-18 95.9 220 30.5
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 6.6e-16 89.4 211 30.8
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 8.6e-16 89.0 132 44.7
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 4.3e-15 86.7 232 30.6
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.2e-14 85.1 136 40.4
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.8e-14 84.0 137 43.1
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.7e-14 83.2 142 43.7
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.4e-10 71.6 103 38.8
arahy.Tifrunner.gnm1.ann1.14GY92 Arachis hypogaea HOM05D003796 ORTHO05D004486 7.1e-10 69.3 102 44.1
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 9.2e-10 68.9 103 35.9
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.6e-09 68.2 103 33.0
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.1e-09 67.8 105 34.3
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.7e-09 67.4 112 34.8
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 3.5e-09 67.0 83 42.2
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.6e-09 66.6 259 22.4
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 4.6e-09 66.6 247 25.9
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 7.8e-09 65.9 105 34.3
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 7.8e-09 65.9 205 25.9
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 7.8e-09 65.9 82 43.9
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.0e-08 65.5 83 39.8
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.3e-08 65.1 237 24.9
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.7e-08 64.7 82 42.7
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.7e-08 64.7 84 39.3
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.7e-08 64.7 104 34.6
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.7e-08 64.7 102 35.3
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.3e-08 64.3 102 30.4
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.3e-08 64.3 104 33.7
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 2.3e-08 64.3 235 24.3
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 3.9e-08 63.5 87 39.1
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 3.9e-08 63.5 107 32.7
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 5.1e-08 63.2 103 35.0
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 5.1e-08 63.2 203 26.1
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 5.1e-08 63.2 203 28.1
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 6.6e-08 62.8 103 33.0
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 8.6e-08 62.4 35 85.7
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 8.6e-08 62.4 104 32.7
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 8.6e-08 62.4 64 48.4
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.1e-07 62.0 247 24.3
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.1e-07 62.0 107 34.6
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 1.5e-07 61.6 72 41.7
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.5e-07 61.6 84 39.3
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.9e-07 61.2 102 31.4
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.9e-07 61.2 105 33.3
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 2.5e-07 60.8 87 37.9
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.5e-07 60.8 104 34.6
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 2.5e-07 60.8 70 42.9
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 3.3e-07 60.5 84 39.3
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 3.3e-07 60.5 71 42.3
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 3.3e-07 60.5 104 31.7
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 4.3e-07 60.1 231 23.4
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 5.6e-07 59.7 103 31.1
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 5.6e-07 59.7 105 32.4
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 7.3e-07 59.3 271 22.9
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 7.3e-07 59.3 105 32.4
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 7.3e-07 59.3 105 32.4
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 9.6e-07 58.9 101 31.7
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 9.6e-07 58.9 230 21.7
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.2e-06 58.5 104 31.7
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.2e-06 58.5 104 35.6
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.6e-06 58.2 104 33.7
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 2.1e-06 57.8 71 40.8
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 2.1e-06 57.8 103 34.0
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 3.6e-06 57.0 80 41.2
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 3.6e-06 57.0 91 39.6
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 3.6e-06 57.0 105 29.5
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 3.6e-06 57.0 72 37.5
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 6.2e-06 56.2 71 42.3


User provided reference genes

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