Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 1.8e-61 239.2 131 100.0
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 1.2e-57 226.5 132 88.6
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 4.9e-43 177.9 130 78.5
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 2.4e-37 159.1 130 70.0
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 2.6e-36 155.6 130 70.8
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 3.8e-35 151.8 129 69.8
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 8.4e-35 150.6 129 62.0
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 3.9e-32 141.7 131 67.9
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 1.6e-30 136.3 133 66.9
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 1.8e-29 132.9 132 59.1
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 4.0e-29 131.7 130 63.8
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 5.3e-29 131.3 133 59.4
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 3.4e-28 128.6 132 60.6
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 2.9e-27 125.6 133 63.2
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 8.4e-27 124.0 132 59.1
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 1.1e-26 123.6 134 61.9
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 1.4e-26 123.2 132 59.1
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 2.4e-26 122.5 127 61.4
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 4.2e-26 121.7 127 60.6
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 4.2e-26 121.7 127 60.6
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 1.3e-24 116.7 142 55.6
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 1.9e-23 112.8 112 61.6
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 2.5e-23 112.5 129 62.0
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 6.2e-22 107.8 129 64.3
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 1.1e-21 107.1 129 62.8
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 4.0e-21 105.1 137 48.2
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 5.3e-21 104.8 117 62.4
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 6.9e-21 104.4 121 59.5
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 2.6e-20 102.4 128 56.2
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 1.0e-19 100.5 131 51.1
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 1.7e-19 99.8 135 52.6
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 1.7e-19 99.8 137 46.7
Actinidia11440 Actinidia chinensis HOM05D007607 ORTHO05D009603 6.5e-19 97.8 134 48.5
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 1.4e-18 96.7 126 54.0
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 3.2e-18 95.5 126 54.8
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 9.3e-18 94.0 135 52.6
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 1.6e-17 93.2 127 51.2
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 1.8e-16 89.7 131 51.9
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 3.0e-16 89.0 134 53.7
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 3.9e-16 88.6 137 54.0
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 8.7e-16 87.4 130 49.2
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 1.1e-15 87.0 137 54.0
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 1.5e-15 86.7 136 47.1
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 2.5e-15 85.9 132 50.8
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 5.7e-15 84.7 76 67.1
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 7.4e-15 84.3 125 52.8
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 9.6e-15 84.0 148 52.7
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 1.6e-14 83.2 133 48.9
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 2.1e-14 82.8 126 53.2
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 1.1e-13 80.5 119 52.9
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 1.8e-13 79.7 132 45.5
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 1.8e-13 79.7 145 48.3
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 2.4e-13 79.3 130 46.9
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 3.1e-13 79.0 131 48.9
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 3.1e-13 79.0 130 48.5
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 5.3e-13 78.2 120 47.5
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 6.9e-13 77.8 121 43.8
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 6.9e-13 77.8 126 41.3
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 9.0e-13 77.4 145 48.3
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 1.5e-12 76.6 129 48.8
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 1.5e-12 76.6 141 44.0
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 2.0e-12 76.3 77 70.1
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 2.0e-12 76.3 77 70.1
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 3.4e-12 75.5 73 60.3
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 3.4e-12 75.5 93 59.1
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 4.5e-12 75.1 139 41.7
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 5.9e-12 74.7 77 68.8
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 5.9e-12 74.7 125 42.4
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 7.6e-12 74.3 77 68.8
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 7.6e-12 74.3 77 68.8
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 1.3e-11 73.6 84 60.7
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 2.9e-11 72.4 77 68.8
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 3.8e-11 72.0 130 46.2
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 3.8e-11 72.0 127 49.6
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 5.0e-11 71.6 82 64.6
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 5.0e-11 71.6 131 48.1
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 6.5e-11 71.2 77 64.9
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 1.1e-10 70.5 142 46.5
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 1.4e-10 70.1 73 64.4
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 1.4e-10 70.1 79 53.2
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 2.5e-10 69.3 77 64.9
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 2.5e-10 69.3 77 64.9
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 3.2e-10 68.9 77 64.9
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 4.2e-10 68.6 77 66.2
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 5.5e-10 68.2 78 67.9
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 7.2e-10 67.8 141 44.7
Phvul.003G059800 Phaseolus vulgaris HOM05D007607 ORTHO05D009603 9.3e-10 67.4 143 42.0
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 2.1e-09 66.2 77 61.0
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 3.5e-09 65.5 99 47.5
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 3.5e-09 65.5 67 71.6
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 4.6e-09 65.1 77 61.0
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 1.8e-08 63.2 77 61.0
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 8.7e-08 60.8 77 59.7
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 1.1e-07 60.5 39 76.9
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 1.5e-07 60.1 77 58.4
CARHR021860 Cardamine hirsuta HOM05D007607 ORTHO05D009603 1.9e-07 59.7 77 57.1
Medtr4g087540 Medicago truncatula HOM05D007607 ORTHO05D009603 2.5e-07 59.3 141 42.6
Ah.13g073390 Amaranthus hybridus HOM05D007607 ORTHO05D009603 3.3e-07 58.9 38 81.6
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 7.4e-07 57.8 38 78.9


User provided reference genes

Program Settings