Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.7e-57 225.7 111 100.0
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 3.0e-33 145.2 102 77.5
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 1.5e-32 142.9 102 75.5
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 2.6e-29 132.1 102 68.6
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 5.8e-29 131.0 102 66.7
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 2.2e-28 129.0 102 67.6
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 2.2e-28 129.0 102 67.6
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 3.2e-27 125.2 102 65.7
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 3.2e-27 125.2 102 65.7
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 3.2e-27 125.2 102 64.7
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 4.2e-27 124.8 86 76.7
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 5.5e-27 124.4 102 63.7
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 1.6e-26 122.9 102 64.7
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 2.1e-26 122.5 102 63.7
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 4.6e-26 121.3 97 64.9
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 4.6e-26 121.3 86 70.9
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 4.6e-26 121.3 86 70.9
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 4.6e-26 121.3 86 70.9
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 7.9e-26 120.6 86 69.8
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 7.9e-26 120.6 85 70.6
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 7.9e-26 120.6 85 70.6
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 1.0e-25 120.2 102 62.7
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.0e-25 120.2 102 63.7
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.0e-25 120.2 86 69.8
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 1.0e-25 120.2 102 64.7
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.3e-25 119.8 86 70.9
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.3e-25 119.8 86 70.9
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.3e-25 119.8 86 70.9
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.3e-25 119.8 100 65.0
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 3.0e-25 118.6 92 68.5
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 3.0e-25 118.6 102 61.8
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 3.9e-25 118.2 100 59.0
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 6.7e-25 117.5 86 68.6
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 6.7e-25 117.5 86 70.9
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 6.7e-25 117.5 102 60.8
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 8.7e-25 117.1 102 62.7
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 8.7e-25 117.1 102 63.7
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 8.7e-25 117.1 86 67.4
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 8.7e-25 117.1 102 60.8
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 8.7e-25 117.1 102 60.8
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 8.7e-25 117.1 85 69.4
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.1e-24 116.7 83 67.5
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 1.1e-24 116.7 86 67.4
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.1e-24 116.7 102 63.7
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 1.9e-24 115.9 102 60.8
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.9e-24 115.9 100 64.0
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.9e-24 115.9 100 64.0
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.5e-24 115.5 86 68.6
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 3.3e-24 115.2 102 59.8
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 3.3e-24 115.2 97 63.9
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 3.3e-24 115.2 86 68.6
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 3.3e-24 115.2 86 69.8
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 4.3e-24 114.8 102 59.8
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 5.6e-24 114.4 102 59.8
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.6e-23 112.8 105 57.1
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 2.1e-23 112.5 102 60.8
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 3.7e-23 111.7 85 67.1
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 3.7e-23 111.7 102 58.8
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 4.8e-23 111.3 86 67.4
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 6.2e-23 110.9 86 66.3
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 6.2e-23 110.9 86 64.0
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 6.2e-23 110.9 83 69.9
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 8.2e-23 110.5 85 63.5
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 8.2e-23 110.5 85 63.5
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 1.4e-22 109.8 84 67.9
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 1.4e-22 109.8 102 55.9
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 2.4e-22 109.0 105 56.2
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.4e-22 109.0 86 66.3
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.4e-22 109.0 86 66.3
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 2.4e-22 109.0 86 66.3
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 3.1e-22 108.6 84 69.0
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.1e-22 108.6 86 65.1
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 3.1e-22 108.6 98 60.2
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 3.1e-22 108.6 102 53.9
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 3.1e-22 108.6 99 59.6
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 4.0e-22 108.2 99 54.5
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 4.0e-22 108.2 83 63.9
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 5.3e-22 107.8 102 56.9
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 5.3e-22 107.8 86 65.1
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 9.0e-22 107.1 83 66.3
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 2.6e-21 105.5 86 62.8
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 4.5e-21 104.8 105 54.3
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.8e-21 104.4 83 65.1
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 5.8e-21 104.4 86 64.0
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 1.0e-20 103.6 105 52.4
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.3e-20 103.2 83 63.9
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 1.3e-20 103.2 82 64.6
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.7e-20 102.8 82 65.9
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.7e-20 102.8 83 63.9
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 2.2e-20 102.4 102 55.9
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 2.2e-20 102.4 83 61.4
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 2.2e-20 102.4 87 60.9
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 3.8e-20 101.7 86 61.6
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.9e-20 101.3 84 57.1
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 1.4e-19 99.8 102 53.9
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.4e-19 99.8 82 64.6
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.4e-19 99.8 82 63.4
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 2.5e-19 99.0 83 62.7
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 3.2e-19 98.6 84 60.7
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 7.1e-19 97.4 86 60.5
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 9.3e-19 97.1 105 49.5
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 9.3e-19 97.1 110 50.0
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 7.9e-18 94.0 102 56.9
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 3.0e-17 92.0 86 55.8
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 3.9e-17 91.7 86 59.3
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.1e-16 90.1 106 48.1
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 1.3e-15 86.7 75 62.7
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 2.4e-14 82.4 87 50.6
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 2.6e-13 79.0 90 46.7
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 5.9e-13 77.8 90 47.8
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 1.0e-12 77.0 90 45.6
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.3e-12 76.6 90 47.8
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 1.1e-11 73.6 90 43.3
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 2.5e-11 72.4 80 47.5
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.2e-11 72.0 64 56.2
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 4.2e-11 71.6 90 44.4
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 7.2e-11 70.9 90 44.4
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 7.2e-11 70.9 47 72.3
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 1.2e-10 70.1 77 49.4
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.6e-10 69.7 48 64.6
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.6e-10 69.7 48 64.6
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.6e-10 68.2 48 62.5
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 7.9e-10 67.4 75 48.0
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 7.9e-10 67.4 75 48.0
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 7.9e-10 67.4 75 48.0
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 7.9e-10 67.4 75 48.0
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 1.4e-09 66.6 57 61.4
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 2.3e-09 65.9 85 45.9
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 2.5e-08 62.4 72 47.2
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 4.3e-08 61.6 88 38.6
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 7.4e-08 60.8 72 45.8
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 7.4e-08 60.8 66 50.0
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 7.4e-08 60.8 66 50.0


User provided reference genes

Program Settings