Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 1.5e-50 202.6 109 100.0
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 6.5e-49 197.2 112 97.3
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.7e-44 182.6 112 90.2
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 4.1e-43 177.9 109 89.9
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 9.1e-43 176.8 112 89.3
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 2.0e-42 175.6 110 88.2
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 2.6e-42 175.3 112 89.3
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 2.9e-41 171.8 112 86.6
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 2.9e-41 171.8 112 85.7
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 5.0e-41 171.0 112 84.8
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 6.5e-41 170.6 112 86.6
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 6.5e-41 170.6 107 90.7
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 8.5e-41 170.2 112 87.5
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 8.5e-41 170.2 112 84.8
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 1.1e-40 169.9 112 85.7
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 1.5e-40 169.5 112 85.7
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 3.2e-40 168.3 112 85.7
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 3.2e-40 168.3 112 87.5
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 4.2e-40 167.9 112 84.8
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 4.2e-40 167.9 112 85.7
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 5.5e-40 167.5 112 85.7
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 7.2e-40 167.2 112 85.7
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 7.2e-40 167.2 112 84.8
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 7.2e-40 167.2 107 88.8
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 9.4e-40 166.8 112 83.9
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 9.4e-40 166.8 134 74.6
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.6e-39 166.0 112 84.8
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 2.1e-39 165.6 112 85.7
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 2.1e-39 165.6 112 83.9
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 2.1e-39 165.6 112 83.9
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 2.7e-39 165.2 112 85.7
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 2.7e-39 165.2 110 86.4
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 3.6e-39 164.9 113 82.3
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 3.6e-39 164.9 112 85.7
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 3.6e-39 164.9 112 83.0
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 3.6e-39 164.9 112 85.7
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 4.7e-39 164.5 112 82.1
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 4.7e-39 164.5 112 82.1
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 4.7e-39 164.5 112 83.0
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 6.1e-39 164.1 112 83.9
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 6.1e-39 164.1 112 83.0
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 1.0e-38 163.3 110 86.4
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 1.8e-38 162.5 107 86.9
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 2.3e-38 162.2 110 86.4
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 2.3e-38 162.2 112 84.8
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 2.3e-38 162.2 112 84.8
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 3.0e-38 161.8 112 83.9
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 4.0e-38 161.4 112 83.9
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 5.2e-38 161.0 112 84.8
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 5.2e-38 161.0 112 84.8
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 5.2e-38 161.0 112 84.8
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 5.2e-38 161.0 112 83.9
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 6.7e-38 160.6 112 83.9
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 6.7e-38 160.6 112 83.9
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 1.5e-37 159.5 112 83.0
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 2.0e-37 159.1 110 83.6
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.0e-37 159.1 112 83.9
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 2.0e-37 159.1 110 84.5
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.6e-37 158.7 112 83.0
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 2.6e-37 158.7 112 83.0
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.6e-37 158.7 112 83.0
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 4.4e-37 157.9 112 83.0
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 5.7e-37 157.5 105 88.6
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 5.7e-37 157.5 112 79.5
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 5.7e-37 157.5 112 83.0
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 7.5e-37 157.1 128 74.2
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 1.3e-36 156.4 112 81.2
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.7e-36 156.0 110 79.1
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 3.7e-36 154.8 112 79.5
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 8.2e-36 153.7 112 81.2
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 1.1e-35 153.3 112 77.7
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 1.1e-35 153.3 110 80.0
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.1e-35 153.3 110 80.9
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 2.4e-35 152.1 112 80.4
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 3.1e-35 151.8 112 78.6
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 4.1e-35 151.4 112 78.6
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 4.1e-35 151.4 112 78.6
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 5.3e-35 151.0 112 78.6
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 5.3e-35 151.0 112 78.6
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 5.3e-35 151.0 112 78.6
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 5.3e-35 151.0 108 80.6
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 5.3e-35 151.0 108 80.6
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 9.1e-35 150.2 99 86.9
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 9.1e-35 150.2 110 80.0
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 1.2e-34 149.8 103 79.6
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 76.4
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 3.5e-34 148.3 112 78.6
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 5.9e-34 147.5 112 79.5
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.0e-33 146.7 112 78.6
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.0e-33 146.7 112 78.6
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.3e-33 146.4 100 81.0
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 1.7e-33 146.0 110 74.5
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 1.7e-33 146.0 106 77.4
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 2.2e-33 145.6 110 75.5
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 2.9e-33 145.2 110 75.5
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 2.9e-33 145.2 110 74.5
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 2.9e-33 145.2 110 74.5
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 2.9e-33 145.2 110 74.5
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 2.9e-33 145.2 110 74.5
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 2.9e-33 145.2 110 73.6
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.9e-33 145.2 110 75.5
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 6.5e-33 144.1 111 75.7
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.1e-32 143.3 110 73.6
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.5e-32 142.9 110 73.6
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 1.5e-32 142.9 112 75.9
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.9e-32 142.5 112 75.9
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 4.2e-32 141.4 110 73.6
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 9.4e-32 140.2 110 72.7
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 9.4e-32 140.2 112 75.9
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.2e-31 139.8 113 71.7
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 3.6e-31 138.3 100 83.0
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 3.6e-31 138.3 110 71.8
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 4.7e-31 137.9 112 76.8
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 6.1e-31 137.5 99 79.8
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 3.0e-30 135.2 109 71.6
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 5.2e-30 134.4 112 72.3
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 5.2e-30 134.4 108 71.3
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 1.2e-29 133.3 112 71.4
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 2.0e-29 132.5 97 77.3
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 2.6e-29 132.1 108 73.1
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 3.4e-29 131.7 112 71.4
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.7e-28 129.4 100 72.0
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.1e-27 126.7 182 51.6
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 4.1e-27 124.8 98 75.5
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.1e-27 124.8 112 68.8
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.1e-27 124.8 109 68.8
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 4.5e-26 121.3 100 71.0
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 2.3e-25 119.0 109 67.0
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 2.9e-25 118.6 85 78.8
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 1.6e-23 112.8 108 63.9
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 8.0e-23 110.5 101 63.4
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 1.4e-22 109.8 84 81.0
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 1.8e-22 109.4 107 59.8
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.4e-21 105.1 71 83.1
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 7.3e-16 87.4 58 84.5
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 6.1e-15 84.3 57 78.9
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.4e-14 83.2 50 90.0
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 2.2e-12 75.9 59 74.6
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 1.1e-11 73.6 93 52.7
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 5.4e-11 71.2 110 45.5
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 9.2e-11 70.5 62 66.1
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 3.5e-10 68.6 56 73.2
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 6.0e-10 67.8 62 67.7
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 3.0e-09 65.5 52 73.1


User provided reference genes

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