Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 2.1e-103 379.0 186 100.0
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.4e-51 206.1 143 73.4
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.0e-49 200.7 143 67.8
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.7e-49 199.9 143 68.5
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 5.0e-49 198.4 142 68.3
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.4e-48 196.8 143 65.0
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.2e-48 195.7 142 65.5
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 4.2e-48 195.3 143 67.8
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 9.4e-48 194.1 143 65.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.6e-47 193.4 143 65.7
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.6e-47 193.4 143 65.7
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 2.1e-47 193.0 143 65.0
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 2.1e-47 193.0 143 65.0
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 2.7e-47 192.6 143 65.0
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 3.6e-47 192.2 143 64.3
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 3.6e-47 192.2 143 64.3
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 4.7e-47 191.8 143 64.3
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 4.7e-47 191.8 142 66.2
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 8.0e-47 191.0 143 65.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 8.0e-47 191.0 143 65.7
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 8.0e-47 191.0 142 64.1
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.8e-46 189.9 143 65.0
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 2.3e-46 189.5 143 63.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 3.0e-46 189.1 111 81.1
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 3.0e-46 189.1 142 64.1
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 3.9e-46 188.7 143 65.0
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 6.7e-46 188.0 142 64.1
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 6.7e-46 188.0 143 63.6
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 8.8e-46 187.6 143 64.3
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.1e-45 187.2 143 62.9
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.5e-45 186.8 143 63.6
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 1.5e-45 186.8 143 64.3
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.0e-45 186.4 143 63.6
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.0e-45 186.4 143 61.5
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 3.3e-45 185.7 147 63.9
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.3e-45 185.7 142 64.8
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.7e-45 184.1 124 69.4
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.3e-44 183.7 142 61.3
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.7e-44 183.3 143 63.6
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 2.2e-44 183.0 143 62.9
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.2e-44 183.0 126 69.0
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 2.8e-44 182.6 143 60.8
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.8e-44 182.6 143 60.1
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 2.8e-44 182.6 144 62.5
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 2.8e-44 182.6 143 60.8
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 2.8e-44 182.6 143 60.8
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 4.8e-44 181.8 143 61.5
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 4.8e-44 181.8 143 61.5
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 6.3e-44 181.4 143 62.2
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 6.3e-44 181.4 143 60.1
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.1e-43 180.6 143 58.7
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.1e-43 180.6 143 60.8
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 1.1e-43 180.6 124 66.1
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.4e-43 180.3 143 61.5
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.8e-43 179.9 143 59.4
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.8e-43 179.9 122 68.9
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 2.4e-43 179.5 152 57.2
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 2.4e-43 179.5 125 66.4
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 3.1e-43 179.1 124 72.6
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 3.1e-43 179.1 143 60.8
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 9.1e-43 177.6 147 57.8
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.2e-42 177.2 143 60.1
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.2e-42 177.2 143 58.0
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.6e-42 176.8 149 58.4
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.6e-42 176.8 142 57.7
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.6e-42 176.8 143 58.0
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.0e-42 176.4 143 62.2
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 2.0e-42 176.4 126 64.3
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.5e-42 175.6 142 57.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.0e-41 174.1 143 58.0
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.0e-41 174.1 143 57.3
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 1.0e-41 174.1 142 57.7
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.0e-41 174.1 142 57.7
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.7e-41 173.3 143 57.3
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.7e-41 173.3 143 56.6
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.7e-41 173.3 143 55.2
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 2.2e-41 172.9 124 63.7
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 2.9e-41 172.6 143 58.7
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 3.8e-41 172.2 143 55.9
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 3.8e-41 172.2 143 55.9
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 3.8e-41 172.2 143 56.6
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 3.8e-41 172.2 143 56.6
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 3.8e-41 172.2 124 63.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 8.5e-41 171.0 143 58.7
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 1.1e-40 170.6 142 57.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.1e-40 170.6 137 60.6
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.5e-40 170.2 143 55.9
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.5e-40 170.2 122 64.8
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.9e-40 169.9 122 63.9
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 2.5e-40 169.5 143 55.9
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 2.5e-40 169.5 127 61.4
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 3.2e-40 169.1 143 55.2
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 3.2e-40 169.1 122 62.3
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 3.2e-40 169.1 143 58.0
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 4.2e-40 168.7 122 63.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 4.2e-40 168.7 123 62.6
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 5.5e-40 168.3 143 58.0
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.2e-39 167.2 140 58.6
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.6e-39 166.8 143 55.9
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 3.6e-39 165.6 142 54.9
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 3.6e-39 165.6 142 55.6
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 3.6e-39 165.6 142 55.6
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.0e-38 164.1 143 53.8
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.0e-38 162.5 122 60.7
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.2e-37 160.6 147 53.7
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 1.3e-36 157.1 111 64.0
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.3e-36 154.8 121 60.3
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 9.1e-35 151.0 107 64.5
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.9e-34 148.3 124 54.0
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.9e-33 146.0 124 53.2
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.9e-33 146.0 134 49.3
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.0e-33 145.2 94 67.0
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.5e-32 143.7 98 65.3
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.9e-32 143.3 125 53.6
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 5.5e-32 141.7 90 65.6
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 1.6e-31 140.2 111 55.9
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 1.0e-30 137.5 142 48.6
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 2.0e-29 133.3 142 45.1
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 9.8e-29 131.0 126 55.6
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 2.8e-28 129.4 121 47.1
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.6e-26 123.6 108 53.7
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 5.9e-26 121.7 143 48.3
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 7.7e-26 121.3 134 43.3
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.5e-24 117.1 142 38.0
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.2e-23 114.0 148 38.5
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 2.8e-23 112.8 77 67.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 4.7e-23 112.1 146 37.0
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 5.4e-19 98.6 83 53.0
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 7.0e-19 98.2 75 64.0
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 1.2e-18 97.4 71 66.2
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 2.7e-18 96.3 73 61.6
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 1.3e-17 94.0 62 71.0
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 8.0e-15 84.7 105 41.9
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 5.2e-14 82.0 71 64.8
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 1.3e-12 77.4 48 68.8
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 4.9e-12 75.5 48 68.8
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.4e-11 73.9 62 53.2
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 1.9e-11 73.6 56 58.9
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 2.4e-11 73.2 58 55.2
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 4.6e-10 68.9 56 55.4
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 4.6e-10 68.9 70 55.7
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 3.0e-09 66.2 70 42.9


User provided reference genes

Program Settings