Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 0.0e+00 2662.1 1394 100.0
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 0.0e+00 2249.9 1242 95.1
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 0.0e+00 2067.7 1417 78.1
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 0.0e+00 1824.7 1234 78.1
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1721.4 1418 66.2
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 0.0e+00 1721.1 1404 66.3
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 0.0e+00 1704.9 1410 65.0
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1664.8 1417 64.6
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 0.0e+00 1662.1 1420 65.2
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 0.0e+00 1650.2 1414 63.3
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1637.5 1405 64.2
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1635.2 1406 64.0
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 0.0e+00 1632.8 1412 62.0
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 0.0e+00 1615.5 1402 63.6
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1581.2 1410 61.8
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 0.0e+00 1567.7 1424 61.0
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 0.0e+00 1564.3 1290 65.1
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 0.0e+00 1561.6 1406 61.6
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 0.0e+00 1553.9 1404 61.3
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 0.0e+00 1535.8 1407 61.3
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 0.0e+00 1527.3 1406 59.7
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 0.0e+00 1526.9 1424 59.0
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 0.0e+00 1507.3 1402 59.7
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 0.0e+00 1495.3 1225 66.0
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 0.0e+00 1486.9 1225 65.5
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 0.0e+00 1459.5 1411 57.5
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 0.0e+00 1439.1 1407 57.1
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 0.0e+00 1422.1 1425 56.4
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 0.0e+00 1415.2 1426 55.1
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 0.0e+00 1412.1 1438 55.5
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 0.0e+00 1407.5 1413 54.6
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 0.0e+00 1391.7 1438 54.1
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 0.0e+00 1386.7 1420 55.1
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 0.0e+00 1375.1 1335 55.7
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 0.0e+00 1373.2 1381 55.5
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1369.8 1427 54.1
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 0.0e+00 1364.4 1336 56.1
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 0.0e+00 1362.1 1430 53.3
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 0.0e+00 1355.1 1394 54.8
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 0.0e+00 1352.0 1231 59.9
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 0.0e+00 1350.5 1416 53.2
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 0.0e+00 1349.3 1328 55.6
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1337.4 1359 54.0
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 0.0e+00 1335.1 1090 66.8
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1325.5 1422 52.5
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 0.0e+00 1313.1 1388 53.3
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 0.0e+00 1310.4 1365 53.9
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 0.0e+00 1307.4 1428 51.9
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 0.0e+00 1305.8 1370 53.0
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1302.3 1357 53.1
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 0.0e+00 1301.2 1365 53.9
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 0.0e+00 1286.6 1435 51.6
Manes.03G197500 Manihot esculenta HOM05D007614 ORTHO05D009538 0.0e+00 1210.7 1118 59.8
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 0.0e+00 1202.2 1371 50.2
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 0.0e+00 1201.8 1033 63.1
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 0.0e+00 1192.9 1412 50.4
Cpa.g.sc16.197 Carica papaya HOM05D007614 ORTHO05D009538 0.0e+00 1159.4 1039 61.6
PGSC0003DMG400011332 Solanum tuberosum HOM05D007614 ORTHO05D009538 0.0e+00 1158.7 1231 52.7
Eucgr.B01588 Eucalyptus grandis HOM05D007614 ORTHO05D009538 0.0e+00 1138.6 1132 55.7
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 0.0e+00 1120.5 1200 53.7
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 0.0e+00 1103.6 1174 53.3
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 0.0e+00 1085.9 1040 57.5
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 0.0e+00 1078.5 1038 57.5
Hma1.2p1_1807F.1_g303400 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 2.2e-303 1046.2 846 65.6
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 1.2e-299 1033.9 1422 45.4
Hma1.2p1_0804F.1_g220930 Hydrangea macrophylla HOM05D007614 ORTHO05D009538 6.3e-290 1001.5 846 63.6
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 3.7e-282 975.7 1413 43.6
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 2.1e-261 906.7 1337 41.4
BcaC03g17696 Brassica carinata HOM05D007614 ORTHO05D009538 1.2e-235 821.2 993 49.5
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 1.1e-228 798.1 1420 38.2
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 6.1e-224 782.3 1258 39.4
Migut.G00138 Erythranthe guttata HOM05D007614 ORTHO05D009538 5.0e-218 762.7 699 60.1
Actinidia00005 Actinidia chinensis HOM05D007614 ORTHO05D009538 5.9e-211 739.2 713 58.5
CAN.G421.11 Capsicum annuum HOM05D007614 ORTHO05D009538 1.1e-209 734.9 892 48.2
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 5.7e-182 642.9 1347 34.8
HanXRQChr03g0089461 Helianthus annuus HOM05D007614 ORTHO05D009538 2.8e-181 640.6 632 56.8
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 1.8e-175 621.3 1328 34.6
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 2.2e-173 614.4 1392 33.8
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 1.8e-172 611.3 1492 32.4
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 3.4e-134 484.2 665 44.1
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 1.1e-116 426.0 476 49.6
BcaB01g01537 Brassica carinata HOM05D007614 ORTHO05D009538 1.1e-95 356.3 335 58.8
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 1.2e-94 352.8 1321 27.2
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 4.1e-87 327.8 359 52.1
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 8.8e-82 310.1 273 66.7
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 3.5e-78 298.1 293 55.6
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 1.2e-65 256.5 270 56.3
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 1.9e-52 212.6 254 52.0
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 7.3e-52 210.7 203 59.6
HanXRQChr03g0089471 Helianthus annuus HOM05D007614 ORTHO05D009538 2.9e-40 172.2 288 39.9
Actinidia14288 Actinidia chinensis HOM05D007614 ORTHO05D009538 7.8e-38 164.1 120 70.8
Actinidia27756 Actinidia chinensis HOM05D007614 ORTHO05D009538 4.9e-32 144.8 104 71.2
BcaB04g20478 Brassica carinata HOM05D007614 ORTHO05D009538 7.8e-30 137.5 103 66.0
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 4.5e-17 95.1 153 46.4
Zm00001eb167500 Zea mays HOM05D000563 ORTHO05D009538 1.2e-14 87.0 118 44.9
Actinidia14287 Actinidia chinensis HOM05D065619 ORTHO05D037991 8.7e-13 80.9 87 50.6
Cre07.g314700 Chlamydomonas reinhardtii HOM05D058327 ORTHO05D009538 4.2e-07 62.0 218 25.7
Os05g0314700 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 4.2e-07 62.0 109 40.4


User provided reference genes

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