Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 2515.3 1253 100.0
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1988.0 1167 87.5
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1679.1 1160 74.6
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1676.4 1163 73.9
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1415.6 1165 63.7
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1385.2 1156 62.5
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1349.3 1153 61.1
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1343.9 1207 58.8
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1328.9 1071 63.0
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1302.0 1103 60.5
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1299.6 1117 59.8
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1296.2 1110 60.0
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1291.2 1084 60.3
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1291.2 1163 60.0
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1278.5 1088 59.7
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1278.1 1148 58.5
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1277.7 1096 59.9
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1277.7 1096 59.9
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1269.6 1083 60.0
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1268.1 1160 58.3
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1268.1 1082 59.9
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1266.1 1107 59.4
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1258.8 1155 57.7
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1258.4 1166 57.4
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1250.3 1135 56.8
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1247.3 1134 58.3
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1237.6 1168 57.4
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1227.2 1032 61.0
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1223.8 1103 58.8
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1203.7 1081 57.3
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1201.4 1170 53.8
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1199.5 1081 56.6
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1190.6 1148 54.4
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1190.6 1144 54.9
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1187.2 1070 56.4
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1180.6 1099 55.7
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1175.2 1089 55.9
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1169.8 1173 54.0
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1155.6 1070 56.1
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1151.3 1117 55.1
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1149.8 1143 53.1
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1133.2 1151 52.0
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1131.7 953 60.1
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1131.3 1123 54.0
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1127.5 1159 53.2
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1125.5 1181 51.1
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1100.5 1138 51.7
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1100.5 1086 54.2
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1097.4 1107 53.2
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1097.0 1160 51.1
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1090.9 1110 51.5
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1090.5 1101 53.2
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1088.2 1167 51.9
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1083.6 1149 50.3
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 0.0e+00 1081.2 851 64.6
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 8.6e-312 1073.5 1061 53.4
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 8.5e-310 1067.4 1126 50.9
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 6.7e-307 1057.7 1163 48.3
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 5.7e-306 1054.7 1078 52.1
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 1.2e-303 1047.0 1067 52.1
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.0e-303 1046.2 1118 48.8
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 3.8e-302 1042.0 1072 51.7
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 6.5e-302 1041.2 1069 51.9
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 1.9e-301 1039.6 1071 51.8
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 9.4e-301 1037.3 1018 53.2
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.6e-300 1036.6 1075 51.3
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 1.4e-299 1033.5 882 61.5
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 3.3e-298 1028.9 1070 50.5
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 3.3e-298 1028.9 1160 48.8
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 9.1e-296 1020.8 1053 51.1
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.8e-291 1006.5 988 52.8
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 8.2e-289 997.7 1086 49.6
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 9.1e-288 994.2 792 63.0
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 5.2e-283 978.4 1069 48.2
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 6.3e-281 971.5 825 59.9
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 2.5e-277 959.5 1071 48.1
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.6e-276 956.8 1192 45.8
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 6.8e-275 951.4 721 66.0
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.2e-274 950.7 931 53.8
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 9.2e-272 941.0 928 55.1
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 1.5e-269 933.7 949 52.3
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 3.7e-265 919.1 1107 47.8
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 6.6e-262 908.3 762 61.2
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 8.6e-262 907.9 1108 45.2
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 9.5e-253 877.9 1120 44.1
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 1.7e-249 867.1 1136 44.7
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 9.6e-237 824.7 689 61.4
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 6.0e-231 805.4 928 48.2
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.1e-224 784.6 1028 43.2
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 3.8e-217 759.6 735 54.8
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 2.8e-212 743.4 734 53.0
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 9.0e-203 711.8 1124 38.4
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.1e-195 686.4 559 62.8
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 9.1e-195 685.3 1108 37.8
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 6.3e-188 662.5 653 53.4
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 4.5e-186 656.4 666 50.5
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 7.7e-178 629.0 512 62.1
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 1.4e-142 511.9 622 46.1
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 3.4e-117 427.6 383 57.7
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 4.2e-115 420.6 410 55.6
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 4.8e-103 380.6 376 53.7
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 4.9e-100 370.5 379 51.5
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 2.5e-88 331.6 220 69.1
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 1.3e-76 292.7 333 45.6
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 6.9e-70 270.4 203 66.0
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 4.2e-67 261.2 239 56.5
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 1.7e-60 239.2 223 55.2
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.6e-58 232.6 194 59.3
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.0e-57 229.9 194 60.3
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.2e-56 226.5 194 58.8
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.6e-56 225.3 1065 23.5
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.3e-55 223.0 227 51.5
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 4.2e-51 208.0 190 57.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 3.0e-49 201.8 182 53.8
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 2.0e-48 199.1 130 72.3
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 3.4e-48 198.4 371 35.3
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 3.5e-37 161.8 133 60.9
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 6.6e-36 157.5 122 61.5
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.6e-34 152.9 191 43.5
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.8e-34 152.1 894 22.7
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.9e-30 139.4 136 51.5
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 5.4e-30 137.9 141 52.5
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 6.6e-28 131.0 124 54.8
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.5e-27 129.0 663 24.1
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 6.8e-25 120.9 114 53.5
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 1.5e-24 119.8 83 63.9
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 2.6e-24 119.0 244 35.2
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 9.8e-24 117.1 83 61.4
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 3.7e-23 115.2 153 37.3
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 7.0e-22 110.9 999 21.2
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 6.6e-20 104.4 93 57.0
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 1.2e-16 93.6 77 53.2
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 7.1e-14 84.3 112 38.4
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 2.7e-13 82.4 58 63.8
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.6e-13 81.6 100 44.0
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 7.8e-13 80.9 58 62.1
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.9e-11 76.3 57 59.6
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.3e-11 75.5 624 21.2
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 1.8e-09 69.7 85 44.7
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.1e-09 68.9 426 22.5
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 6.8e-09 67.8 302 23.5
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.4e-08 65.1 409 24.9
Actinidia18537 Actinidia chinensis HOM05D028264 ORTHO05D057578 9.9e-08 63.9 83 49.4
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 1.1e-06 60.5 58 53.4
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.4e-06 59.3 50 60.0
C07p39710 Brassica napus HOM05D039519 ORTHO05D032788 4.2e-06 58.5 37 64.9
BolC7t44496H Brassica oleracea HOM05D039519 ORTHO05D032788 9.2e-06 57.4 33 69.7


User provided reference genes

Program Settings