Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 1.4e-167 592.8 291 100.0
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 9.0e-130 467.2 306 79.7
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 8.7e-125 450.7 248 92.3
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 1.4e-119 433.3 288 77.8
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 3.2e-119 432.2 315 73.0
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 4.2e-119 431.8 250 87.6
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 4.6e-118 428.3 265 81.9
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 4.6e-118 428.3 308 74.7
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 4.6e-118 428.3 305 75.1
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 7.9e-118 427.6 304 72.7
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 3.0e-117 425.6 298 73.8
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 3.9e-117 425.2 309 72.5
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 3.9e-117 425.2 304 74.3
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 5.1e-117 424.9 306 73.9
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 6.7e-117 424.5 302 72.5
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 1.1e-116 423.7 286 76.9
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.1e-116 423.7 311 72.3
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 3.3e-116 422.2 302 71.9
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 5.7e-116 421.4 304 72.7
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 1.3e-115 420.2 293 74.4
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 2.4e-114 416.0 286 75.5
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 4.1e-114 415.2 237 86.5
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 9.0e-114 414.1 235 86.0
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 1.5e-113 413.3 285 74.0
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 2.6e-113 412.5 247 80.6
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 3.4e-113 412.1 288 73.3
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 3.4e-113 412.1 282 74.5
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 3.4e-113 412.1 299 72.6
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 4.5e-113 411.8 238 85.3
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 5.0e-112 408.3 236 83.9
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 6.5e-112 407.9 301 71.1
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 8.5e-112 407.5 236 83.5
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 1.4e-111 406.8 288 72.6
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.9e-111 406.4 287 75.6
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 1.9e-111 406.4 288 75.3
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 3.2e-111 405.6 289 73.0
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 4.2e-111 405.2 235 84.3
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 5.5e-111 404.8 279 73.8
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 1.2e-110 403.7 263 76.0
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 2.7e-110 402.5 280 72.9
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 6.1e-110 401.4 260 76.2
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.4e-109 400.2 241 80.1
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 2.3e-109 399.4 299 69.2
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 5.1e-109 398.3 305 67.9
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 6.7e-109 397.9 236 82.2
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 8.8e-109 397.5 237 80.6
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 1.5e-108 396.7 259 75.3
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 1.5e-108 396.7 279 71.0
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 2.0e-108 396.4 301 66.4
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 3.3e-108 395.6 230 81.7
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 4.3e-108 395.2 236 80.5
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 4.3e-108 395.2 250 77.6
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 7.4e-108 394.4 230 82.2
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.3e-107 393.7 235 80.9
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 2.2e-107 392.9 249 77.1
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 2.2e-107 392.9 235 80.4
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 2.8e-107 392.5 235 79.6
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 2.8e-107 392.5 252 77.0
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 3.7e-107 392.1 268 72.8
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 6.3e-107 391.3 288 69.4
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 2.0e-105 386.3 235 77.9
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 2.0e-105 386.3 235 79.6
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 5.9e-105 384.8 234 79.9
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 7.7e-105 384.4 251 74.1
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 7.7e-105 384.4 235 77.0
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 1.0e-104 384.0 232 78.9
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 1.3e-104 383.6 309 65.4
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 1.7e-104 383.3 235 77.4
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 1.7e-104 383.3 252 75.4
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 1.7e-104 383.3 235 79.6
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 6.5e-104 381.3 256 73.0
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 1.9e-103 379.8 310 65.5
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 1.9e-103 379.8 235 78.3
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 2.5e-103 379.4 273 72.2
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 2.5e-103 379.4 267 69.3
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 1.2e-102 377.1 238 78.2
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 2.1e-102 376.3 235 77.0
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 2.7e-102 375.9 235 76.6
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 1.0e-101 374.0 270 72.2
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.0e-101 372.5 235 76.2
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 3.9e-101 372.1 252 75.4
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 8.8e-101 370.9 253 73.9
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 8.8e-101 370.9 287 67.2
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 1.1e-100 370.5 253 73.1
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 1.5e-100 370.2 297 68.4
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 9.7e-100 367.5 235 75.7
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 2.8e-99 365.9 235 76.6
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 9.1e-98 360.9 235 75.7
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.2e-97 360.5 235 73.2
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 2.0e-97 359.8 249 72.3
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 4.5e-97 358.6 235 71.5
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 1.7e-96 356.7 235 71.1
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.1e-92 344.0 237 68.8
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 2.0e-92 343.2 306 62.4
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 4.4e-92 342.0 236 68.2
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 5.7e-92 341.7 288 59.7
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 1.3e-91 340.5 239 67.4
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 1.3e-91 340.5 241 68.5
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 4.8e-91 338.6 314 63.1
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 2.2e-88 329.7 221 71.0
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 2.2e-88 329.7 221 70.1
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 3.8e-88 328.9 273 65.6
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 8.5e-88 327.8 236 69.5
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 4.2e-87 325.5 221 69.2
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 2.1e-86 323.2 220 68.6
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 4.7e-86 322.0 238 65.5
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 8.0e-86 321.2 239 64.4
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.0e-85 320.9 250 63.2
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 1.7e-83 313.5 235 65.5
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 6.3e-83 311.6 237 62.9
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 1.4e-77 293.9 235 63.8
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.2e-76 290.8 235 63.4
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 1.2e-76 290.8 237 61.6
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 1.7e-75 287.0 285 57.2
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 1.8e-74 283.5 239 64.9
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 5.4e-74 282.0 162 80.2
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 2.7e-73 279.6 185 69.7
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 8.6e-72 274.6 174 75.3
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 6.8e-69 265.0 247 60.7
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 2.0e-68 263.5 226 58.8
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 1.4e-66 257.3 277 56.0
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 8.6e-64 248.1 245 58.0
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 9.5e-63 244.6 196 63.8
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 3.6e-62 242.7 288 46.2
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 3.4e-60 236.1 165 71.5
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 2.4e-58 229.9 259 52.9
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 7.0e-58 228.4 156 70.5
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 9.5e-55 218.0 158 67.7
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 7.5e-52 208.4 120 77.5
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 1.7e-48 197.2 301 40.2
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 6.4e-43 178.7 245 44.9
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 7.3e-39 165.2 278 43.5
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 2.4e-37 160.2 117 67.5
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 7.1e-34 148.7 101 75.2
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 1.5e-31 141.0 135 55.6
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 1.1e-29 134.8 130 58.5
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 1.8e-29 134.0 103 65.0
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 8.4e-27 125.2 121 54.5
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 2.4e-26 123.6 74 82.4
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 4.5e-20 102.8 58 86.2
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.3e-16 90.5 81 61.7
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 3.0e-16 90.1 74 58.1
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.5e-15 87.8 134 39.6
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 2.4e-13 80.5 57 64.9
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 6.9e-13 79.0 56 73.2


User provided reference genes

Program Settings