Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 2.7e-141 505.4 266 100.0
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 1.1e-134 483.4 266 93.6
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 1.4e-116 423.3 265 81.1
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 5.2e-108 394.8 266 76.7
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 7.5e-99 364.4 268 72.8
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 5.9e-96 354.8 266 71.1
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 5.9e-96 354.8 266 68.8
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 1.3e-95 353.6 260 71.9
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 2.5e-94 349.4 264 67.4
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 9.5e-94 347.4 260 68.8
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 2.1e-93 346.3 266 67.7
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 2.1e-93 346.3 264 67.8
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 8.0e-93 344.4 256 66.8
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 1.1e-92 344.0 267 67.0
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 1.4e-92 343.6 265 68.7
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 5.2e-92 341.7 266 68.4
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 6.8e-92 341.3 266 66.5
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 8.9e-92 340.9 263 69.6
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 1.2e-91 340.5 267 67.0
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.5e-91 340.1 269 67.7
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 3.4e-91 339.0 264 69.7
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 4.4e-91 338.6 266 66.2
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 9.8e-91 337.4 264 68.6
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.3e-90 337.0 267 67.0
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 1.7e-90 336.7 266 68.4
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 2.9e-90 335.9 268 67.5
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 2.9e-90 335.9 265 66.0
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 3.7e-90 335.5 264 68.2
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 3.7e-90 335.5 260 68.5
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 4.1e-89 332.0 270 68.1
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 4.1e-89 332.0 270 68.1
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 7.0e-89 331.3 266 66.9
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 9.2e-89 330.9 267 66.3
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 6.0e-88 328.2 267 65.2
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.0e-87 327.4 267 64.0
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 1.3e-87 327.0 266 65.4
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 5.0e-87 325.1 268 66.0
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 1.1e-86 323.9 260 67.3
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.5e-86 323.6 271 63.1
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 4.3e-86 322.0 265 64.5
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 9.5e-86 320.9 260 63.8
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.2e-85 320.5 266 65.0
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.2e-85 320.5 260 63.8
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.2e-85 320.5 240 68.3
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.2e-85 320.5 240 68.3
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.6e-85 320.1 262 63.0
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 2.1e-85 319.7 260 63.8
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 3.6e-85 318.9 267 62.5
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 6.2e-85 318.2 266 65.4
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 2.3e-84 316.2 266 62.8
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 2.6e-83 312.8 265 61.9
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 3.4e-83 312.4 266 59.0
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 1.3e-82 310.5 259 62.5
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 8.3e-82 307.8 241 66.8
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 4.1e-81 305.4 270 61.9
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 1.6e-80 303.5 253 63.2
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 7.8e-80 301.2 253 60.9
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 1.3e-79 300.4 265 60.0
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 3.9e-79 298.9 266 59.8
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 5.1e-79 298.5 264 59.5
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 1.5e-78 297.0 246 62.6
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.5e-78 297.0 264 59.5
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.5e-78 297.0 246 62.2
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 1.9e-78 296.6 246 63.4
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 1.9e-78 296.6 246 63.4
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 5.6e-78 295.0 246 63.0
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 5.6e-78 295.0 267 61.0
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 5.6e-78 295.0 270 61.1
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 9.5e-78 294.3 241 63.9
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 9.5e-78 294.3 246 62.2
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.6e-77 293.5 246 62.6
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.6e-77 293.5 246 62.6
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 1.6e-77 293.5 255 61.2
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 2.8e-77 292.7 246 62.2
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 4.7e-77 292.0 246 62.2
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 4.7e-77 292.0 251 61.0
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 6.2e-77 291.6 246 62.2
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 8.1e-77 291.2 241 63.5
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 1.8e-76 290.0 241 63.5
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 2.4e-76 289.7 265 59.6
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 3.1e-76 289.3 271 58.7
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 6.8e-76 288.1 271 58.3
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 9.9e-75 284.3 267 57.3
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.7e-74 283.5 205 72.2
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 2.2e-74 283.1 271 57.6
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 8.4e-74 281.2 239 59.0
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 1.4e-73 280.4 248 58.5
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 1.4e-73 280.4 270 58.1
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.4e-73 280.4 269 57.2
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 1.9e-73 280.0 249 60.6
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 3.2e-73 279.3 228 63.6
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 3.2e-73 279.3 246 62.2
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 4.1e-73 278.9 249 58.2
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 7.1e-73 278.1 272 57.7
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.6e-72 276.9 269 56.9
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.0e-71 274.2 260 57.3
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.0e-71 274.2 267 54.3
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 2.3e-71 273.1 228 61.4
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 3.0e-71 272.7 251 56.6
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 6.6e-71 271.6 252 55.2
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 1.5e-70 270.4 245 58.8
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 7.3e-70 268.1 225 61.8
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.2e-69 267.3 266 54.9
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 1.2e-69 267.3 269 53.9
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 6.2e-69 265.0 267 57.3
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 1.7e-66 256.9 256 54.3
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 6.4e-66 255.0 259 54.1
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 1.9e-65 253.4 243 58.4
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 5.4e-65 251.9 271 52.4
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.2e-64 250.8 213 62.0
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 7.8e-64 248.1 210 65.2
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 1.9e-62 243.4 266 54.5
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 5.6e-62 241.9 269 52.4
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 6.2e-61 238.4 224 56.2
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 6.9e-60 235.0 217 61.3
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 2.6e-59 233.0 217 61.3
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 4.8e-53 212.2 227 50.7
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.1e-52 211.1 251 50.2
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 5.8e-51 205.3 241 49.8
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.3e-47 194.1 133 68.4
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 3.3e-46 189.5 230 46.1
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 9.7e-38 161.4 197 50.3
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.1e-36 157.9 137 56.2
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.1e-36 157.9 197 49.2
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.2e-35 154.5 214 41.6
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 2.0e-35 153.7 134 57.5
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 5.0e-34 149.1 172 48.8
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 6.5e-34 148.7 140 55.0
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.4e-33 147.5 229 37.6
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.9e-33 147.1 223 36.8
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 4.2e-33 146.0 168 49.4
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.6e-32 142.5 223 36.3
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 6.1e-32 142.1 255 36.5
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 1.0e-31 141.4 221 38.0
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 3.9e-31 139.4 231 38.5
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.1e-28 129.8 158 48.7
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 1.9e-17 94.0 83 59.0
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 5.7e-14 82.4 80 58.8
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 5.7e-14 82.4 80 58.8
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.7e-13 79.7 77 62.3
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 5.0e-10 69.3 167 31.1
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 6.7e-07 58.9 55 60.0
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 3.3e-06 56.6 77 39.0
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 4.4e-06 56.2 55 60.0


User provided reference genes

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