Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01067 Corylus avellana HOM05D005983 ORTHO05D007438 1.6e-166 589.3 296 100.0
QL12p011684 Quercus lobata HOM05D005983 ORTHO05D007438 2.2e-131 472.6 275 84.0
CiPaw.11G080800 Carya illinoinensis HOM05D005983 ORTHO05D007438 2.4e-122 442.6 276 79.0
Prupe.5G066800 Prunus persica HOM05D005983 ORTHO05D007438 1.1e-111 407.1 275 73.8
CANSAT21G0098 Cannabis sativa HOM05D005983 ORTHO05D007438 4.3e-111 405.2 278 72.7
MD06G1055900 Malus domestica HOM05D005983 ORTHO05D007438 2.6e-108 396.0 275 72.4
GSVIVG01004724001 Vitis vinifera HOM05D005983 ORTHO05D007438 5.8e-108 394.8 275 70.9
CSS0015193 Camellia sinensis var. sinensis HOM05D005983 ORTHO05D007438 3.7e-107 392.1 277 71.5
FAN04G1995 Fragaria x ananassa HOM05D005983 ORTHO05D007438 8.3e-107 391.0 277 70.4
arahy.Tifrunner.gnm1.ann1.NE97L5 Arachis hypogaea HOM05D005983 ORTHO05D007438 1.4e-106 390.2 275 71.3
FAN08G1502 Fragaria x ananassa HOM05D005983 ORTHO05D007438 1.4e-106 390.2 277 70.0
RcHm_v2.0_Chr7g0203641 Rosa chinensis HOM05D005983 ORTHO05D007438 1.4e-106 390.2 277 70.8
arahy.Tifrunner.gnm1.ann1.0NSC2B Arachis hypogaea HOM05D005983 ORTHO05D007438 1.9e-106 389.8 275 71.3
FvH4_5g19150 Fragaria vesca HOM05D005983 ORTHO05D007438 4.1e-106 388.7 277 70.0
FAN18G0274 Fragaria x ananassa HOM05D005983 ORTHO05D007438 4.1e-106 388.7 277 70.0
Lalb_Chr05g0214371 Lupinus albus HOM05D005983 ORTHO05D007438 1.6e-105 386.7 275 69.8
Eucgr.E00410 Eucalyptus grandis HOM05D005983 ORTHO05D007438 4.6e-105 385.2 277 70.8
Potri.003G078300 Populus trichocarpa HOM05D005983 ORTHO05D007438 7.8e-105 384.4 276 70.3
Cpa.g.sc29.178 Carica papaya HOM05D005983 ORTHO05D007438 1.3e-104 383.6 277 68.2
Ciclev10020120m.g Citrus clementina HOM05D005983 ORTHO05D007438 1.7e-104 383.3 275 69.1
Duzib084G0278 Durio zibethinus HOM05D005983 ORTHO05D007438 1.7e-104 383.3 277 68.6
Thecc.03G249100 Theobroma cacao HOM05D005983 ORTHO05D007438 3.0e-104 382.5 277 69.3
Atru.chr9.1290 Acer truncatum HOM05D005983 ORTHO05D007438 3.9e-104 382.1 277 71.1
Glyma.01G207800 Glycine max HOM05D005983 ORTHO05D007438 3.9e-104 382.1 276 71.7
Hma1.2p1_0316F.1_g122960 Hydrangea macrophylla HOM05D005983 ORTHO05D007438 1.5e-103 380.2 279 68.8
Lj2g0002324 Lotus japonicus HOM05D005983 ORTHO05D007438 2.1e-102 376.3 275 70.2
Phvul.002G057200 Phaseolus vulgaris HOM05D005983 ORTHO05D007438 2.8e-102 375.9 275 70.5
VMungo1215G0088 Vigna mungo HOM05D005983 ORTHO05D007438 1.1e-101 374.0 275 68.7
Sabra03G0048600 Salix brachista HOM05D005983 ORTHO05D007438 3.1e-101 372.5 282 68.1
TAR713G0001 Trochodendron aralioides HOM05D005983 ORTHO05D007438 2.6e-100 369.4 275 70.2
Duzib205G1394 Durio zibethinus HOM05D005983 ORTHO05D007438 3.4e-100 369.0 275 67.3
Sc01g0008340 Simmondsia chinensis HOM05D005983 ORTHO05D007438 1.3e-99 367.1 278 66.9
Dinv21647 Davidia involucrata HOM05D005983 ORTHO05D007438 2.2e-99 366.3 278 69.1
Ca_24588_v3 Cicer arietinum L. HOM05D005983 ORTHO05D007438 8.4e-99 364.4 276 69.6
Solyc06g060780.4 Solanum lycopersicum HOM05D005983 ORTHO05D007438 1.1e-98 364.0 279 67.4
Sed0018188 Sechium edule HOM05D005983 ORTHO05D007438 3.2e-98 362.5 275 66.2
Sopen06g020900 Solanum pennellii HOM05D005983 ORTHO05D007438 3.2e-98 362.5 279 67.0
PGSC0003DMG402011882 Solanum tuberosum HOM05D005983 ORTHO05D007438 3.2e-98 362.5 279 67.0
Medtr5g012880 Medicago truncatula HOM05D005983 ORTHO05D007438 4.1e-98 362.1 276 66.3
COL.COLO4_37146 Corchorus olitorius HOM05D005983 ORTHO05D007438 9.2e-98 360.9 267 68.5
Psat2g176840 Pisum sativum HOM05D005983 ORTHO05D007438 9.2e-98 360.9 277 69.0
Nn1g00952 Nelumbo nucifera HOM05D005983 ORTHO05D007438 1.6e-97 360.1 275 68.7
MELO3C005523.2 Cucumis melo HOM05D005983 ORTHO05D007438 2.1e-97 359.8 279 66.7
Gohir.A03G007500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 2.1e-97 359.8 280 65.4
Gohir.D03G163500 Gossypium hirsutum HOM05D005983 ORTHO05D007438 2.1e-97 359.8 260 69.2
TWI15G0813 Tripterygium wilfordii HOM05D005983 ORTHO05D007438 2.7e-97 359.4 277 66.1
Gorai.003G172200 Gossypium raimondii HOM05D005983 ORTHO05D007438 3.5e-97 359.0 280 65.0
Cc08_g12250 Coffea canephora HOM05D005983 ORTHO05D007438 1.3e-96 357.1 282 67.4
ClCG01G004150 Citrullus lanatus HOM05D005983 ORTHO05D007438 2.3e-96 356.3 279 65.6
TPR.G18111 Trifolium pratense HOM05D005983 ORTHO05D007438 2.3e-96 356.3 278 65.8
PGR042G2168 Punica granatum HOM05D005983 ORTHO05D007438 3.0e-96 355.9 279 66.3
Nitab4.5_0000618g0100 Nicotiana tabacum HOM05D005983 ORTHO05D007438 1.5e-95 353.6 280 65.0
Peaxi162Scf01022g00324 Petunia axillaris HOM05D005983 ORTHO05D007438 1.5e-95 353.6 279 66.3
MBI04_g09520_MAGBIO Magnolia biondii HOM05D005983 ORTHO05D007438 2.5e-95 352.8 281 64.4
DCAR_004965 Daucus carota HOM05D005983 ORTHO05D007438 1.4e-93 347.1 282 66.0
Migut.A01119 Erythranthe guttata HOM05D005983 ORTHO05D007438 5.2e-93 345.1 284 63.7
CAN.G62.33 Capsicum annuum HOM05D005983 ORTHO05D007438 1.5e-92 343.6 279 64.9
Sed0010070 Sechium edule HOM05D005983 ORTHO05D007438 1.5e-92 343.6 278 63.3
SalBow6G6019 Salvia bowleyana HOM05D005983 ORTHO05D007438 4.4e-92 342.0 268 66.8
ATR0317G025 Amborella trichopoda HOM05D005983 ORTHO05D007438 2.2e-91 339.7 278 64.0
HanXRQChr16g0510961 Helianthus annuus HOM05D005983 ORTHO05D007438 8.4e-91 337.8 280 63.6
Hund14571 Selenicereus undatus HOM05D005983 ORTHO05D007438 4.2e-90 335.5 279 62.0
Actinidia02145 Actinidia chinensis HOM05D005983 ORTHO05D007438 1.1e-87 327.4 229 73.4
Lj2A220G37 Lonicera japonica HOM05D005983 ORTHO05D007438 3.3e-87 325.9 214 74.8
Aqoxy5G03845 Aquilegia oxysepala HOM05D005983 ORTHO05D007438 4.3e-87 325.5 278 64.4
Manes.01G082200 Manihot esculenta HOM05D005983 ORTHO05D007438 2.8e-86 322.8 207 76.8
Rhsim01G0100800 Rhododendron simsii HOM05D005983 ORTHO05D007438 1.4e-85 320.5 378 48.9
Aa31LG2G12890 Aethionema arabicum HOM05D005983 ORTHO05D007438 2.4e-85 319.7 271 60.9
SGA_v2.0_scaffold104G30169 Striga asiatica HOM05D005983 ORTHO05D007438 9.0e-85 317.8 318 56.3
AT4G16700 Arabidopsis thaliana HOM05D005983 ORTHO05D007438 4.5e-84 315.5 275 61.1
Thhalv10025592m.g Eutrema salsugineum HOM05D005983 ORTHO05D007438 4.5e-84 315.5 283 61.5
Sp7g15340 Schrenkiella parvula HOM05D005983 ORTHO05D007438 5.8e-84 315.1 288 59.0
BcaNung00159 Brassica carinata HOM05D005983 ORTHO05D007438 9.9e-84 314.3 261 61.7
AL7G38030 Arabidopsis lyrata HOM05D005983 ORTHO05D007438 2.2e-83 313.2 287 60.3
unitig_744.g24471 Utricularia gibba HOM05D005983 ORTHO05D007438 2.9e-83 312.8 238 63.0
CsaV3_5G004310 Cucumis sativus L. HOM05D005983 ORTHO05D007438 6.4e-83 311.6 207 72.9
CARHR223230 Cardamine hirsuta HOM05D005983 ORTHO05D007438 1.1e-82 310.8 273 60.1
EL10Ac5g12377 Beta vulgaris HOM05D005983 ORTHO05D007438 1.4e-82 310.5 325 51.4
ECA233G1798 Erigeron canadensis HOM05D005983 ORTHO05D007438 1.4e-82 310.5 220 69.5
BcaC09g50403 Brassica carinata HOM05D005983 ORTHO05D007438 2.4e-82 309.7 281 59.1
C01p25880 Brassica napus HOM05D005983 ORTHO05D007438 2.4e-82 309.7 281 59.1
BolC1t02533H Brassica oleracea HOM05D005983 ORTHO05D007438 2.4e-82 309.7 281 59.1
A01p20580 Brassica napus HOM05D005983 ORTHO05D007438 7.1e-82 308.1 281 58.7
BraA01t01986Z Brassica rapa HOM05D005983 ORTHO05D007438 7.1e-82 308.1 281 58.7
Carub.0007s2469 Capsella rubella HOM05D005983 ORTHO05D007438 2.1e-81 306.6 285 60.0
PSO357G0330 Papaver somniferum HOM05D005983 ORTHO05D007438 4.6e-81 305.4 223 67.7
PSO170G1657 Papaver somniferum HOM05D005983 ORTHO05D007438 3.0e-80 302.8 223 66.8
Lsat_1_v5_gn_6_18021 Lactuca sativa HOM05D005983 ORTHO05D007438 6.2e-78 295.0 266 60.2
Os03g0101900 Oryza sativa ssp. japonica HOM05D005983 ORTHO05D007438 1.8e-77 293.5 233 62.2
Ah.12g054210 Amaranthus hybridus HOM05D005983 ORTHO05D007438 4.0e-77 292.4 279 56.3
AUR62007103 Chenopodium quinoa HOM05D005983 ORTHO05D007438 2.4e-74 283.1 282 55.0
vmacro00190 Vaccinium macrocarpon HOM05D005983 ORTHO05D007438 4.2e-74 282.3 334 51.8
AUR62019966 Chenopodium quinoa HOM05D005983 ORTHO05D007438 2.7e-73 279.6 282 54.6
HPP92_015120 Vanilla planifolia HOM05D005983 ORTHO05D007438 4.3e-63 245.7 193 62.7
Mapoly0144s0014 Marchantia polymorpha HOM05D005983 ORTHO05D007438 1.0e-59 234.6 238 51.7
Actinidia14414 Actinidia chinensis HOM05D005983 ORTHO05D007438 2.9e-59 233.0 190 65.3
THA.LOC104815498 Tarenaya hassleriana HOM05D005983 ORTHO05D007438 8.7e-56 221.5 297 43.8
Pp3c10_660 Physcomitrium patens HOM05D005983 ORTHO05D007438 9.7e-55 218.0 245 48.2
SMO351G0559 Selaginella moellendorffii HOM05D005983 ORTHO05D007438 1.2e-49 201.1 217 47.5
CDE04G0678 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 6.9e-45 185.3 168 57.7
Nitab4.5_0001076g0010 Nicotiana tabacum HOM05D005983 ORTHO05D007438 6.5e-43 178.7 132 68.2
CBR_g40206 Chara braunii HOM05D005983 ORTHO05D007438 1.0e-40 171.4 233 40.8
SEGI_17682 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 5.5e-34 149.1 121 60.3
SEGI_40726 Sequoiadendron giganteum HOM05D005983 ORTHO05D007438 1.8e-21 107.5 82 61.0
RcHm_v2.0_Chr7g0203671 Rosa chinensis HOM05D005983 ORTHO05D007438 3.8e-19 99.8 112 50.9
Cfa023268 Carpinus fangiana HOM05D005983 ORTHO05D007438 1.1e-13 81.6 161 34.8
CDE04G1583 Ceratophyllum demersum HOM05D005983 ORTHO05D007438 2.4e-13 80.5 76 52.6
Lsat_1_v5_gn_4_25380 Lactuca sativa HOM05D005983 ORTHO05D007438 2.9e-11 73.6 44 72.7
C09p44540 Brassica napus HOM05D005983 ORTHO05D007438 1.9e-10 70.9 100 46.0
BcaC02g09019 Brassica carinata HOM05D005983 ORTHO05D007438 4.3e-10 69.7 100 45.0
C04p39670 Brassica napus HOM05D005983 ORTHO05D007438 4.3e-10 69.7 100 45.0
BolC4t25537H Brassica oleracea HOM05D005983 ORTHO05D007438 4.3e-10 69.7 100 45.0
SHI02535 Sapria himalayana HOM05D005983 ORTHO05D007438 3.0e-08 63.5 59 54.2
Actinidia14415 Actinidia chinensis HOM05D005983 ORTHO05D007438 8.9e-08 62.0 47 57.4
Pp3s32_287 Physcomitrium patens HOM05D003620 ORTHO05D007438 1.7e-06 57.8 86 38.4


User provided reference genes

Program Settings