Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 7.8e-45 183.3 88 100.0
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 3.1e-41 171.4 87 93.1
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.4e-38 161.8 82 91.5
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.4e-38 161.8 87 87.4
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 4.6e-37 157.5 87 83.9
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 4.6e-37 157.5 82 90.2
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 7.9e-37 156.8 87 82.8
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.0e-36 156.4 87 80.5
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-36 156.0 87 82.8
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-36 156.0 87 82.8
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-36 156.0 87 82.8
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 1.3e-36 156.0 87 82.8
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.3e-36 156.0 87 82.8
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.3e-36 156.0 87 82.8
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 1.3e-36 156.0 87 82.8
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.3e-36 156.0 87 82.8
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.3e-36 156.0 87 82.8
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.3e-36 156.0 87 82.8
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.3e-36 156.0 87 82.8
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.3e-36 156.0 87 82.8
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.3e-36 155.2 87 81.6
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.3e-36 155.2 87 81.6
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 2.3e-36 155.2 87 81.6
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 2.3e-36 155.2 85 84.7
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 3.0e-36 154.8 87 81.6
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 3.9e-36 154.5 87 81.6
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 3.9e-36 154.5 87 80.5
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 3.9e-36 154.5 87 80.5
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.9e-36 154.5 87 81.6
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 5.1e-36 154.1 87 80.5
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 5.1e-36 154.1 82 86.6
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 6.7e-36 153.7 87 80.5
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 6.7e-36 153.7 87 80.5
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 8.7e-36 153.3 87 80.5
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 8.7e-36 153.3 82 87.8
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.5e-35 152.5 85 81.2
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.5e-35 152.5 82 86.6
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.5e-35 152.5 86 80.2
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 1.9e-35 152.1 87 81.6
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 2.5e-35 151.8 87 80.5
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 2.5e-35 151.8 87 79.3
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 2.5e-35 151.8 82 86.6
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.5e-35 151.8 86 82.6
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 2.5e-35 151.8 82 86.6
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 3.3e-35 151.4 87 80.5
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.3e-35 151.4 85 82.4
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.3e-35 151.0 87 79.3
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 4.3e-35 151.0 85 80.0
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.3e-35 151.0 85 80.0
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 4.3e-35 151.0 87 79.3
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 4.3e-35 151.0 82 86.6
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.6e-35 150.6 85 81.2
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.6e-35 150.6 87 80.5
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.4e-35 150.2 87 80.5
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.4e-35 150.2 87 79.3
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 7.4e-35 150.2 87 80.5
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 9.6e-35 149.8 85 78.8
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.3e-34 149.4 82 85.4
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.3e-34 149.4 82 85.4
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 1.3e-34 149.4 87 79.3
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 1.6e-34 149.1 85 78.8
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 1.6e-34 149.1 87 79.3
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 1.6e-34 149.1 81 86.4
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.6e-34 149.1 86 77.9
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.1e-34 148.7 87 77.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 2.1e-34 148.7 87 78.2
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 2.1e-34 148.7 82 82.9
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.1e-34 148.7 87 77.0
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 2.8e-34 148.3 82 84.1
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.8e-34 148.3 82 84.1
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.8e-34 148.3 82 84.1
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.8e-34 148.3 82 85.4
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 2.8e-34 148.3 82 84.1
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.8e-34 148.3 80 83.8
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.8e-34 148.3 87 77.0
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 2.8e-34 148.3 87 77.0
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 3.7e-34 147.9 82 82.9
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.7e-34 147.9 87 79.3
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 3.7e-34 147.9 86 80.2
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 4.8e-34 147.5 87 78.2
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 6.2e-34 147.1 86 79.1
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 8.1e-34 146.7 82 81.7
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 8.1e-34 146.7 82 81.7
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 8.1e-34 146.7 87 75.9
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.1e-33 146.4 87 77.0
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.4e-33 146.0 84 79.8
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 1.4e-33 146.0 82 81.7
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.8e-33 145.6 87 75.9
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.8e-33 145.6 87 74.7
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 2.4e-33 145.2 82 82.9
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 4.0e-33 144.4 82 79.3
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 4.0e-33 144.4 82 82.9
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 4.0e-33 144.4 87 74.7
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 5.3e-33 144.1 82 79.3
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.3e-33 144.1 82 79.3
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 5.3e-33 144.1 82 79.3
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 5.3e-33 144.1 85 77.6
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 9.0e-33 143.3 87 73.6
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 9.0e-33 143.3 87 75.9
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 9.0e-33 143.3 82 79.3
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 9.0e-33 143.3 82 79.3
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 1.5e-32 142.5 87 74.7
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 1.5e-32 142.5 87 73.6
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 3.4e-32 141.4 82 76.8
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 3.4e-32 141.4 82 79.3
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 3.4e-32 141.4 81 77.8
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 7.6e-32 140.2 87 70.1
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 7.6e-32 140.2 81 79.0
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 7.6e-32 140.2 89 74.2
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 9.9e-32 139.8 82 76.8
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.3e-31 139.4 82 75.6
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 4.9e-31 137.5 82 76.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 1.1e-30 136.3 78 78.2
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.4e-30 136.0 87 72.4
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.5e-30 135.2 78 78.2
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 5.5e-30 134.0 87 67.8
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 5.5e-30 134.0 87 67.8
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 5.5e-30 134.0 87 67.8
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 5.5e-30 134.0 86 68.6
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.2e-29 132.9 86 68.6
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.6e-29 132.5 88 71.6
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.6e-29 132.5 82 73.2
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 2.7e-29 131.7 84 71.4
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 2.7e-29 131.7 87 71.3
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 3.5e-29 131.3 87 65.5
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.5e-29 131.3 87 66.7
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.5e-29 131.3 87 66.7
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.5e-29 131.3 90 72.2
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 4.6e-29 131.0 87 69.0
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 7.9e-29 130.2 87 66.7
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.0e-28 129.8 78 74.4
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.0e-28 129.8 87 65.5
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.0e-28 129.8 85 65.9
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 3.0e-28 128.3 87 64.4
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 5.1e-28 127.5 87 66.7
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 6.7e-28 127.1 82 69.5
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 6.7e-28 127.1 92 64.1
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 8.7e-28 126.7 85 64.7
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 8.7e-28 126.7 87 64.4
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.1e-27 126.3 87 65.5
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.9e-27 125.6 85 70.6
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 5.6e-27 124.0 82 70.7
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 9.6e-27 123.2 82 69.5
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 6.2e-26 120.6 87 59.8
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.1e-25 119.8 149 46.3
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.8e-25 119.0 73 74.0
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.8e-25 119.0 88 60.2
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 2.4e-25 118.6 63 77.8
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 4.0e-25 117.9 68 73.5
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 5.8e-24 114.0 88 60.2
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 4.9e-23 110.9 59 89.8
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.1e-22 109.8 88 60.2
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.4e-22 109.4 63 82.5
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 1.4e-22 109.4 67 76.1
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 2.5e-22 108.6 63 79.4
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.2e-22 108.2 86 60.5
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.1e-21 105.5 84 57.1
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 2.7e-21 105.1 77 59.7
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 7.9e-21 103.6 53 81.1
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 1.8e-20 102.4 80 58.8
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 3.9e-20 101.3 69 71.0
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 7.4e-19 97.1 60 73.3
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 6.3e-18 94.0 63 69.8
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 6.3e-18 94.0 55 76.4
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.4e-17 92.0 54 77.8
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 5.3e-17 90.9 75 49.3
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 6.9e-17 90.5 51 82.4
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 1.2e-16 89.7 83 51.8
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.2e-16 89.7 47 76.6
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 6.5e-15 84.0 65 63.1
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 9.4e-14 80.1 44 77.3
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 3.3e-11 71.6 69 43.5
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 6.9e-09 63.9 49 61.2
ClCG06G005540 Citrullus lanatus HOM05D004069 ORTHO05D004699 7.2e-06 53.9 35 74.3


User provided reference genes

Program Settings