Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 2.5e-232 808.5 438 100.0
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.1e-158 562.4 402 72.9
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 2.7e-154 549.3 401 71.3
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 6.0e-154 548.1 401 69.3
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 3.0e-153 545.8 402 68.9
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 5.1e-153 545.0 385 75.3
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 1.1e-152 543.9 402 70.4
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 1.9e-152 543.1 402 70.1
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.3e-151 540.4 402 68.4
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 1.3e-151 540.4 402 69.7
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.3e-151 540.4 402 70.9
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.7e-151 538.9 402 69.7
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 3.7e-151 538.9 402 69.7
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 3.7e-151 538.9 402 69.4
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 4.8e-151 538.5 404 69.3
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.4e-150 536.2 402 69.4
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 5.3e-150 535.0 402 69.2
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 6.9e-150 534.6 402 69.4
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 9.0e-150 534.3 402 69.7
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 1.2e-149 533.9 403 69.0
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-149 533.9 402 69.4
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 1.2e-149 533.9 403 69.2
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.5e-149 531.9 402 68.9
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.8e-148 528.9 404 67.8
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 7.1e-147 524.6 403 68.0
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.2e-146 523.9 403 69.0
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.6e-146 523.5 402 67.7
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 7.9e-146 521.2 409 67.5
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.0e-145 520.8 402 68.4
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 8.7e-145 517.7 395 69.6
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 9.7e-144 514.2 402 66.4
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 6.3e-143 511.5 417 65.5
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 1.8e-142 510.0 405 65.4
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 4.1e-142 508.8 403 65.8
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 2.0e-141 506.5 408 65.9
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 2.6e-141 506.1 403 66.3
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.6e-141 506.1 406 67.2
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 2.6e-141 506.1 408 65.7
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 7.7e-141 504.6 405 64.9
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 7.7e-141 504.6 404 64.6
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.0e-140 504.2 399 67.2
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.3e-140 503.8 402 65.4
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.7e-140 503.4 403 65.8
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 2.2e-140 503.1 414 64.3
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 2.2e-140 503.1 403 66.5
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 2.9e-140 502.7 405 64.7
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 2.9e-140 502.7 403 65.0
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 3.8e-140 502.3 386 67.4
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 3.8e-140 502.3 403 65.5
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 6.5e-140 501.5 403 64.8
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 6.5e-140 501.5 403 65.0
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 6.5e-140 501.5 402 66.2
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 6.5e-140 501.5 402 65.9
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.1e-139 500.7 403 66.5
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 1.1e-139 500.7 402 64.2
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.4e-139 500.4 384 69.0
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 3.2e-139 499.2 403 64.8
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 7.2e-139 498.0 403 64.8
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 9.4e-139 497.7 402 64.9
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.6e-138 496.9 403 64.8
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.6e-138 495.7 402 65.9
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 7.9e-138 494.6 403 64.5
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 7.9e-138 494.6 402 63.9
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 7.9e-138 494.6 409 64.1
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.0e-137 494.2 403 64.0
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 1.0e-137 494.2 404 65.3
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.4e-137 493.8 443 60.0
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 1.4e-137 493.8 401 64.6
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 1.8e-137 493.4 402 64.4
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 3.0e-137 492.7 405 64.9
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 6.7e-137 491.5 402 63.7
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 1.1e-136 490.7 402 63.7
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 2.0e-136 490.0 402 63.4
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 3.3e-136 489.2 402 63.4
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 7.4e-136 488.0 385 66.5
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 7.4e-136 488.0 377 66.6
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.7e-135 485.7 410 63.4
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.7e-135 485.7 410 63.4
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 4.1e-134 482.3 394 64.7
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 4.1e-134 482.3 401 63.3
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 6.9e-134 481.5 385 65.7
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 3.4e-133 479.2 410 62.7
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 1.7e-132 476.9 405 64.7
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 3.8e-132 475.7 402 63.7
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.9e-131 473.4 403 62.8
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 1.9e-131 473.4 368 66.3
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.2e-130 470.7 361 66.8
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 2.1e-130 469.9 406 62.1
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 3.6e-130 469.2 403 61.5
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 6.1e-130 468.4 406 63.5
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 1.8e-129 466.8 406 61.8
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 1.8e-129 466.8 347 70.3
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 8.8e-129 464.5 386 64.2
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 3.3e-128 462.6 404 62.1
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 4.4e-128 462.2 402 59.0
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 4.8e-127 458.8 402 61.4
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 2.0e-125 453.4 365 63.3
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.5e-125 452.2 418 61.0
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 7.7e-125 451.4 386 61.9
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.1e-123 447.6 349 65.9
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.2e-122 444.1 394 62.7
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 4.7e-122 442.2 379 60.4
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 8.0e-122 441.4 414 57.0
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.8e-121 440.3 347 65.7
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 9.1e-118 427.9 402 58.0
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 9.1e-118 427.9 356 65.2
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 9.1e-118 427.9 371 62.3
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 5.2e-113 412.1 392 59.4
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 9.7e-112 407.9 377 60.7
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 7.7e-109 398.3 337 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.1e-107 394.4 392 52.6
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 4.0e-105 386.0 349 60.2
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 5.2e-105 385.6 360 53.9
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 5.2e-105 385.6 364 56.6
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 2.6e-104 383.3 355 60.0
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.7e-101 373.2 349 54.7
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 5.2e-97 359.0 360 58.1
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 3.2e-94 349.7 332 58.4
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.2e-88 331.3 392 50.0
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.6e-88 330.1 388 51.0
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 5.2e-81 305.8 295 58.3
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 8.9e-81 305.1 295 58.3
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.1e-69 267.3 153 80.4
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.4e-65 254.6 139 86.3
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.4e-62 243.8 402 41.5
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.0e-60 236.9 174 70.7
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 4.0e-57 226.5 150 79.3
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 2.1e-53 214.2 132 73.5
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.3e-50 204.9 216 53.2
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 2.8e-50 203.8 109 83.5
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 6.9e-49 199.1 108 83.3
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 6.7e-36 156.0 112 68.8
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 7.6e-32 142.5 117 62.4
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 2.1e-29 134.4 347 34.3
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 7.9e-29 132.5 120 61.7
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 2.3e-28 131.0 109 54.1
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 3.3e-27 127.1 354 29.9
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 2.9e-23 114.0 86 62.8
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 3.3e-19 100.5 53 94.3
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 8.2e-18 95.9 64 70.3
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 2.4e-17 94.4 52 82.7
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 5.9e-16 89.7 53 73.6
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 1.7e-15 88.2 79 53.2
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 5.0e-15 86.7 53 75.5
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.4e-14 85.1 75 54.7
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 2.6e-11 74.3 166 37.3
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 2.6e-11 74.3 166 36.1
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 5.7e-11 73.2 56 62.5
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 7.4e-11 72.8 100 43.0
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 8.2e-10 69.3 37 78.4
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 3.2e-06 57.4 31 83.9
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 7.2e-06 56.2 50 60.0


User provided reference genes

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