Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 9.9e-203 709.9 360 100.0
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 3.8e-178 628.2 371 88.7
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 3.5e-160 568.5 385 77.1
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 5.1e-159 564.7 368 78.8
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 9.4e-145 517.3 362 74.0
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 1.0e-143 513.8 369 73.2
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 1.1e-140 503.8 352 75.6
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 1.1e-140 503.8 376 71.5
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 7.0e-140 501.1 353 76.2
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 1.2e-139 500.4 370 70.8
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 2.0e-139 499.6 378 71.2
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 3.5e-139 498.8 375 71.2
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 1.9e-137 493.0 351 72.9
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 3.2e-137 492.3 352 74.1
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 2.7e-136 489.2 356 72.8
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 3.0e-135 485.7 375 68.0
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 3.0e-135 485.7 369 69.9
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 3.0e-135 485.7 351 70.4
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 8.8e-135 484.2 366 68.9
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 7.4e-134 481.1 342 74.6
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 9.7e-134 480.7 375 68.8
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 1.7e-133 479.9 355 71.5
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.4e-132 476.9 351 69.5
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 2.4e-132 476.1 368 67.9
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 4.1e-132 475.3 370 67.6
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 7.0e-132 474.6 348 69.3
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 9.1e-132 474.2 370 68.6
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 1.2e-131 473.8 375 68.0
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 2.6e-131 472.6 351 69.2
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 4.5e-131 471.9 370 68.4
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 4.5e-131 471.9 370 68.4
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 1.3e-130 470.3 403 63.0
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 1.7e-130 469.9 371 65.8
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 2.9e-130 469.2 360 68.9
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 6.5e-130 468.0 362 68.2
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 8.5e-130 467.6 362 67.7
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 1.1e-129 467.2 353 69.4
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 1.5e-129 466.8 381 65.9
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 5.5e-129 464.9 355 69.0
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 1.2e-128 463.8 381 65.6
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 1.2e-128 463.8 367 66.8
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 4.7e-128 461.8 370 65.1
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 8.0e-128 461.1 382 65.4
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 4.0e-127 458.8 358 67.3
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 3.4e-126 455.7 318 74.8
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 1.3e-125 453.8 353 67.4
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 4.8e-125 451.8 411 62.0
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 2.4e-124 449.5 355 67.9
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 4.1e-124 448.7 373 66.0
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 7.0e-124 448.0 358 66.8
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 3.5e-123 445.7 371 64.7
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 5.9e-123 444.9 352 66.5
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 2.9e-122 442.6 322 70.5
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 3.8e-122 442.2 310 71.3
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 8.5e-122 441.0 317 71.6
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 8.5e-122 441.0 317 71.3
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 1.1e-121 440.7 367 64.0
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 1.5e-121 440.3 322 70.5
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 4.2e-121 438.7 372 65.1
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 4.2e-121 438.7 373 64.9
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 9.4e-121 437.6 352 65.6
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 9.4e-121 437.6 314 71.0
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 1.2e-120 437.2 380 61.8
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 1.6e-120 436.8 357 65.3
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 1.6e-120 436.8 392 61.0
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 1.4e-119 433.7 373 63.5
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 3.0e-119 432.6 351 66.1
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 3.0e-119 432.6 373 64.3
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 3.0e-119 432.6 372 63.4
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 5.2e-119 431.8 348 64.7
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 8.8e-119 431.0 372 64.0
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 1.2e-118 430.6 348 64.9
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 2.6e-118 429.5 350 66.6
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 3.4e-118 429.1 351 65.5
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 4.4e-118 428.7 320 70.0
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 7.5e-118 427.9 368 61.1
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 7.5e-118 427.9 424 57.8
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 9.8e-118 427.6 352 64.2
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 2.2e-117 426.4 351 65.2
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.7e-117 425.6 312 67.9
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 6.3e-117 424.9 378 62.2
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 8.3e-117 424.5 285 77.2
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 1.1e-116 424.1 351 66.1
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 3.1e-116 422.5 359 63.8
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 7.0e-116 421.4 360 63.6
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 9.1e-116 421.0 386 60.9
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 2.0e-115 419.9 355 64.5
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 2.7e-115 419.5 350 63.7
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 9.5e-113 411.0 312 68.9
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 9.5e-113 411.0 288 73.3
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 3.6e-112 409.1 314 68.2
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 3.6e-112 409.1 322 66.5
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 4.7e-112 408.7 290 71.7
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 1.0e-111 407.5 327 66.1
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 2.6e-110 402.9 311 68.2
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 2.6e-110 402.9 313 67.4
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 2.6e-110 402.9 313 67.4
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 2.9e-109 399.4 347 64.6
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 1.1e-108 397.5 361 58.2
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 1.1e-108 397.5 317 63.4
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 5.9e-107 391.7 223 85.7
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 1.7e-106 390.2 311 65.3
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 5.0e-106 388.7 348 62.1
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 8.6e-106 387.9 241 78.8
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 5.2e-103 378.6 258 76.7
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 1.3e-101 374.0 263 72.6
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 3.0e-98 362.8 356 59.0
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 1.2e-91 340.9 371 53.6
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 9.5e-89 331.3 195 82.1
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 3.1e-87 326.2 373 50.4
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 8.9e-87 324.7 262 65.6
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 2.6e-86 323.2 266 65.0
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 9.9e-86 321.2 274 62.0
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 2.9e-85 319.7 309 55.3
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 3.2e-84 316.2 308 54.2
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 5.2e-79 298.9 323 49.8
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 3.4e-78 296.2 299 56.5
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.4e-76 290.0 356 49.2
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 3.5e-75 286.2 176 80.7
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 2.2e-69 266.9 352 44.6
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 8.4e-69 265.0 172 79.7
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 9.6e-65 251.5 275 51.3
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 6.2e-64 248.8 171 73.1
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 7.6e-62 241.9 169 73.4
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 2.4e-60 236.9 164 72.6
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 1.6e-56 224.2 188 64.4
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 2.6e-54 216.9 330 36.7
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 2.9e-53 213.4 162 69.8
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.9e-52 210.7 173 64.7
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 1.6e-51 207.6 163 68.7
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.0e-50 204.9 184 56.0
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 3.9e-50 203.0 165 64.8
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.9e-50 203.0 115 80.9
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.1e-49 201.4 124 75.8
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 2.4e-47 193.7 341 35.2
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 1.4e-44 184.5 355 35.5
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 8.2e-40 168.7 286 33.6
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.8e-39 167.5 205 49.3
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 5.3e-39 166.0 216 42.6
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 9.4e-36 155.2 95 77.9
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 6.1e-35 152.5 234 38.5
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 5.1e-34 149.4 303 37.3
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 3.0e-26 123.6 69 84.1
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 4.4e-25 119.8 106 56.6
Cpa.g.sc147.5 Carica papaya HOM05D004989 ORTHO05D006335 5.0e-21 106.3 74 71.6
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 1.2e-19 101.7 77 64.9
TPR.G30666 Trifolium pratense HOM05D004989 ORTHO05D006335 1.1e-17 95.1 73 65.8
AUR62026378 Chenopodium quinoa HOM05D004989 ORTHO05D006335 3.3e-17 93.6 61 72.1
FAN07G1160 Fragaria x ananassa HOM05D004989 ORTHO05D006335 3.8e-13 80.1 51 78.4


User provided reference genes

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