Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 3.3e-90 335.1 180 100.0
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 2.2e-70 269.2 150 96.7
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 1.8e-64 249.6 148 86.5
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.2e-63 246.9 149 85.9
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 3.2e-61 238.8 146 84.9
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 5.5e-61 238.0 151 85.4
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 7.2e-61 237.7 140 88.6
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 7.2e-61 237.7 140 88.6
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 7.2e-61 237.7 149 83.2
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 9.4e-61 237.3 147 85.7
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.2e-60 236.9 157 80.9
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.6e-60 236.5 144 86.1
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.6e-60 236.5 156 80.1
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 2.1e-60 236.1 149 83.2
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 2.1e-60 236.1 166 78.9
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 2.1e-60 236.1 149 82.6
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 2.7e-60 235.7 149 83.2
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 2.7e-60 235.7 148 83.8
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 2.7e-60 235.7 149 83.2
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 3.6e-60 235.3 150 85.3
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 4.6e-60 235.0 150 82.0
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.6e-60 235.0 149 83.9
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 6.1e-60 234.6 150 82.7
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 7.9e-60 234.2 149 82.6
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 7.9e-60 234.2 149 83.2
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 7.9e-60 234.2 148 82.4
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.0e-59 233.8 149 82.6
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.0e-59 233.8 149 81.2
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.4e-59 233.4 149 81.9
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 1.4e-59 233.4 147 84.4
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.8e-59 233.0 149 81.9
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 1.8e-59 233.0 153 79.7
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.8e-59 233.0 149 81.9
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.8e-59 233.0 149 82.6
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 2.3e-59 232.6 140 87.1
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.3e-59 232.6 140 87.1
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.3e-59 232.6 140 86.4
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 2.3e-59 232.6 145 82.1
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.3e-59 232.6 140 87.1
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 3.0e-59 232.3 140 86.4
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 3.0e-59 232.3 140 85.7
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 3.9e-59 231.9 149 83.2
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 3.9e-59 231.9 140 85.7
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 3.9e-59 231.9 149 83.2
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 5.1e-59 231.5 149 82.6
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 5.1e-59 231.5 155 81.3
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.1e-59 231.5 149 83.2
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 5.1e-59 231.5 149 83.2
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 6.7e-59 231.1 140 85.0
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 8.8e-59 230.7 154 81.2
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.1e-58 230.3 148 80.4
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.1e-58 230.3 149 81.9
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 1.1e-58 230.3 147 81.6
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 1.1e-58 230.3 147 81.6
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.5e-58 229.9 145 84.1
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.5e-58 229.9 154 81.2
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.5e-58 229.9 152 80.3
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 1.5e-58 229.9 140 84.3
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 2.0e-58 229.6 148 83.1
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.6e-58 229.2 145 80.0
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 3.3e-58 228.8 144 84.0
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.4e-58 228.4 148 81.1
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 4.4e-58 228.4 144 81.2
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 7.4e-58 227.6 138 84.1
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 9.7e-58 227.3 144 81.2
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 9.7e-58 227.3 148 79.1
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 9.7e-58 227.3 149 81.2
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 9.7e-58 227.3 148 81.1
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 9.7e-58 227.3 149 81.2
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 1.3e-57 226.9 143 81.8
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 1.7e-57 226.5 144 80.6
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 2.2e-57 226.1 145 81.4
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.7e-57 225.3 144 81.2
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 3.7e-57 225.3 149 79.2
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 6.3e-57 224.6 148 81.8
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 6.3e-57 224.6 147 77.6
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 1.1e-56 223.8 134 85.8
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.1e-56 223.8 149 82.6
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.8e-56 223.0 149 81.2
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.1e-56 222.2 141 82.3
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 4.1e-56 221.9 147 81.6
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 4.1e-56 221.9 151 78.8
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 5.3e-56 221.5 147 78.2
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 9.1e-56 220.7 170 70.6
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 9.1e-56 220.7 146 80.8
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.5e-55 219.9 140 82.9
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.0e-55 219.5 140 82.1
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 2.0e-55 219.5 140 82.1
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.4e-55 218.8 146 76.7
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 5.9e-55 218.0 140 82.1
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 5.9e-55 218.0 142 76.8
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 5.9e-55 218.0 145 78.6
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 5.0e-54 214.9 135 82.2
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 8.5e-54 214.2 135 81.5
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 1.1e-53 213.8 139 80.6
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 1.1e-53 213.8 139 80.6
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 2.5e-53 212.6 147 76.2
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 2.5e-53 212.6 145 74.5
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 5.5e-53 211.5 135 80.7
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 7.2e-53 211.1 147 72.1
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.0e-51 207.2 152 70.4
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.0e-51 207.2 142 76.8
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.0e-50 203.0 149 69.8
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 3.3e-50 202.2 146 71.9
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 7.4e-50 201.1 149 70.5
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 7.4e-50 201.1 125 85.6
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 6.3e-49 198.0 149 69.8
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 2.4e-48 196.1 116 86.2
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 7.7e-47 191.0 140 70.0
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 7.7e-47 191.0 140 71.4
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 2.9e-46 189.1 140 69.3
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 2.9e-46 189.1 140 69.3
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 6.5e-46 188.0 150 67.3
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 6.5e-46 188.0 145 66.2
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 8.5e-46 187.6 140 68.6
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 4.2e-45 185.3 136 69.9
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 5.5e-45 184.9 144 70.1
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 5.5e-45 184.9 139 69.8
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 5.5e-45 184.9 139 69.8
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 5.5e-45 184.9 139 69.8
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 9.4e-45 184.1 138 66.7
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 1.2e-44 183.7 141 68.8
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 2.1e-44 183.0 142 68.3
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 2.7e-44 182.6 139 67.6
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 3.6e-44 182.2 134 69.4
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 4.7e-44 181.8 120 79.2
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 8.0e-44 181.0 140 67.9
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.3e-43 179.5 142 62.7
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 8.8e-43 177.6 140 69.3
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 3.3e-42 175.6 140 68.6
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 2.8e-41 172.6 139 67.6
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 2.8e-41 172.6 139 67.6
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 3.5e-39 165.6 140 64.3
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 4.5e-39 165.2 134 61.2
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 1.9e-37 159.8 141 58.9
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.4e-34 148.7 132 60.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 7.5e-34 147.9 130 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.7e-33 146.7 112 62.5
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.3e-30 137.1 131 58.8
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.3e-25 120.6 109 63.3
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 2.2e-25 119.8 90 71.1
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 7.8e-23 111.3 96 65.6
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 1.9e-21 106.7 135 39.3
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.0e-19 100.9 138 39.9
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.9e-13 80.1 70 64.3
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 1.9e-13 80.1 87 47.1


User provided reference genes

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