Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00883 Corylus avellana HOM05D005574 ORTHO05D007102 7.1e-209 730.3 361 100.0
Cfa015664 Carpinus fangiana HOM05D005574 ORTHO05D007102 4.6e-192 674.5 361 93.1
QL06p002087 Quercus lobata HOM05D005574 ORTHO05D007102 2.2e-146 522.7 343 74.1
CiPaw.02G098000 Carya illinoinensis HOM05D005574 ORTHO05D007102 4.2e-145 518.5 362 72.7
Prupe.1G015700 Prunus persica HOM05D005574 ORTHO05D007102 2.8e-125 452.6 341 65.1
MD13G1194900 Malus domestica HOM05D005574 ORTHO05D007102 1.1e-121 440.7 341 64.8
RcHm_v2.0_Chr4g0415861 Rosa chinensis HOM05D005574 ORTHO05D007102 4.7e-120 435.3 346 63.3
MD16G1195700 Malus domestica HOM05D005574 ORTHO05D007102 6.1e-120 434.9 340 62.9
Thecc.04G192400 Theobroma cacao HOM05D005574 ORTHO05D007102 7.5e-118 427.9 362 61.3
GSVIVG01017997001 Vitis vinifera HOM05D005574 ORTHO05D007102 1.7e-117 426.8 361 60.4
FAN12G0525 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.4e-116 421.8 366 59.6
FAN12G2145 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.4e-116 421.8 366 59.6
FAN12G2997 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.4e-116 421.8 366 59.6
FAN07G2976 Fragaria x ananassa HOM05D005574 ORTHO05D007102 2.7e-115 419.5 357 60.5
FvH4_4g16270 Fragaria vesca HOM05D005574 ORTHO05D007102 3.5e-115 419.1 376 57.7
FAN02G2947 Fragaria x ananassa HOM05D005574 ORTHO05D007102 5.9e-115 418.3 354 60.7
Ciclev10005241m.g Citrus clementina HOM05D005574 ORTHO05D007102 4.4e-110 402.1 360 60.3
Glyma.20G147200 Glycine max HOM05D005574 ORTHO05D007102 4.4e-110 402.1 363 59.2
COL.COLO4_05700 Corchorus olitorius HOM05D005574 ORTHO05D007102 1.3e-109 400.6 356 58.4
Dinv44545 Davidia involucrata HOM05D005574 ORTHO05D007102 1.3e-109 400.6 352 59.4
Manes.03G177100 Manihot esculenta HOM05D005574 ORTHO05D007102 1.1e-108 397.5 356 58.4
CANSAT78G2217 Cannabis sativa HOM05D005574 ORTHO05D007102 4.1e-108 395.6 357 57.7
Duzib268G0255 Durio zibethinus HOM05D005574 ORTHO05D007102 4.1e-108 395.6 362 58.3
Potri.010G086100 Populus trichocarpa HOM05D005574 ORTHO05D007102 4.1e-108 395.6 358 60.6
Glyma.10G247300 Glycine max HOM05D005574 ORTHO05D007102 2.0e-107 393.3 363 58.1
CSS0019466 Camellia sinensis var. sinensis HOM05D005574 ORTHO05D007102 6.0e-107 391.7 335 58.5
ClCG05G005090 Citrullus lanatus HOM05D005574 ORTHO05D007102 6.6e-106 388.3 361 57.1
TWI53G0495 Tripterygium wilfordii HOM05D005574 ORTHO05D007102 8.6e-106 387.9 340 59.1
Sabra10G0057600 Salix brachista HOM05D005574 ORTHO05D007102 1.5e-105 387.1 359 57.9
Atru.chr4.2447 Acer truncatum HOM05D005574 ORTHO05D007102 2.5e-105 386.3 363 56.2
Gorai.011G151700 Gossypium raimondii HOM05D005574 ORTHO05D007102 4.7e-104 382.1 339 58.7
MELO3C006525.2 Cucumis melo HOM05D005574 ORTHO05D007102 6.2e-104 381.7 362 56.1
CsaV3_3G013190 Cucumis sativus L. HOM05D005574 ORTHO05D007102 6.2e-104 381.7 361 55.7
TAR362G0087 Trochodendron aralioides HOM05D005574 ORTHO05D007102 1.1e-103 380.9 345 59.1
arahy.Tifrunner.gnm1.ann1.R5YE9W Arachis hypogaea HOM05D005574 ORTHO05D007102 2.3e-103 379.8 340 56.2
arahy.Tifrunner.gnm1.ann1.PUQJ4X Arachis hypogaea HOM05D005574 ORTHO05D007102 5.2e-103 378.6 343 56.0
Gohir.D10G136700 Gossypium hirsutum HOM05D005574 ORTHO05D007102 7.5e-102 374.8 339 58.4
Phvul.007G058100 Phaseolus vulgaris HOM05D005574 ORTHO05D007102 7.5e-102 374.8 349 55.9
Gohir.A10G129500 Gossypium hirsutum HOM05D005574 ORTHO05D007102 3.7e-101 372.5 344 56.4
Rhsim04G0201500 Rhododendron simsii HOM05D005574 ORTHO05D007102 1.1e-100 370.9 374 52.7
Sed0027704 Sechium edule HOM05D005574 ORTHO05D007102 2.4e-100 369.8 330 58.5
Nn6g34090 Nelumbo nucifera HOM05D005574 ORTHO05D007102 6.0e-99 365.2 339 54.3
Peaxi162Scf00092g00614 Petunia axillaris HOM05D005574 ORTHO05D007102 1.7e-98 363.6 365 51.8
Hma1.2p1_0602F.1_g187410 Hydrangea macrophylla HOM05D005574 ORTHO05D007102 3.9e-98 362.5 368 51.9
Lj5g0023935 Lotus japonicus HOM05D005574 ORTHO05D007102 1.9e-97 360.1 345 55.4
Cc03_g03930 Coffea canephora HOM05D005574 ORTHO05D007102 3.3e-97 359.4 361 53.5
Actinidia23520 Actinidia chinensis HOM05D005574 ORTHO05D007102 7.3e-97 358.2 367 54.0
Sed0003604 Sechium edule HOM05D005574 ORTHO05D007102 1.6e-96 357.1 319 58.0
Sopen09g031060 Solanum pennellii HOM05D005574 ORTHO05D007102 4.7e-96 355.5 359 53.2
VMungo0720G0566 Vigna mungo HOM05D005574 ORTHO05D007102 8.1e-96 354.8 365 52.9
Ca_10888_v3 Cicer arietinum L. HOM05D005574 ORTHO05D007102 2.0e-94 350.1 334 54.5
TPR.G5479 Trifolium pratense HOM05D005574 ORTHO05D007102 2.0e-94 350.1 351 52.1
Medtr1g103560 Medicago truncatula HOM05D005574 ORTHO05D007102 9.9e-94 347.8 338 53.6
Nitab4.5_0001920g0060 Nicotiana tabacum HOM05D005574 ORTHO05D007102 1.9e-92 343.6 341 54.0
Solyc09g082180.3 Solanum lycopersicum HOM05D005574 ORTHO05D007102 1.9e-92 343.6 359 51.8
Oeu058969.1 Olea europaea HOM05D005574 ORTHO05D007102 2.4e-92 343.2 348 51.1
Psat6g206920 Pisum sativum HOM05D005574 ORTHO05D007102 5.4e-92 342.0 350 51.4
Nitab4.5_0004135g0020 Nicotiana tabacum HOM05D005574 ORTHO05D007102 3.5e-91 339.3 341 52.5
Dinv14005 Davidia involucrata HOM05D005574 ORTHO05D007102 1.2e-88 330.9 338 53.8
Aqoxy2G03411 Aquilegia oxysepala HOM05D005574 ORTHO05D007102 2.1e-88 330.1 345 50.7
SalBow2G1029 Salvia bowleyana HOM05D005574 ORTHO05D007102 1.8e-87 327.0 348 49.1
MSTRG.4036 Avicennia marina HOM05D005574 ORTHO05D007102 8.9e-87 324.7 363 49.0
Duzib151G0572 Durio zibethinus HOM05D005574 ORTHO05D007102 1.2e-86 324.3 315 55.2
MSTRG.9977 Avicennia marina HOM05D005574 ORTHO05D007102 6.4e-85 318.5 355 50.1
Hund12118 Selenicereus undatus HOM05D005574 ORTHO05D007102 6.4e-85 318.5 366 47.0
Lalb_Chr02g0140631 Lupinus albus HOM05D005574 ORTHO05D007102 8.4e-85 318.2 361 49.3
DCAR_030644 Daucus carota HOM05D005574 ORTHO05D007102 1.1e-84 317.8 345 49.9
PSO210G4004 Papaver somniferum HOM05D005574 ORTHO05D007102 1.4e-84 317.4 354 49.7
SGA_v2.0_scaffold257G45710 Striga asiatica HOM05D005574 ORTHO05D007102 2.6e-78 296.6 338 49.4
AUR62034712 Chenopodium quinoa HOM05D005574 ORTHO05D007102 7.6e-78 295.0 347 45.5
PSO761G0453 Papaver somniferum HOM05D005574 ORTHO05D007102 7.6e-78 295.0 342 48.0
Migut.G00347 Erythranthe guttata HOM05D005574 ORTHO05D007102 3.2e-76 289.7 350 48.3
Thhalv10002568m.g Eutrema salsugineum HOM05D005574 ORTHO05D007102 9.3e-76 288.1 346 45.1
AL1G15280 Arabidopsis lyrata HOM05D005574 ORTHO05D007102 4.6e-75 285.8 379 45.1
Eucgr.B01081 Eucalyptus grandis HOM05D005574 ORTHO05D007102 6.0e-75 285.4 324 50.0
Potri.008G154400 Populus trichocarpa HOM05D005574 ORTHO05D007102 1.3e-74 284.3 255 60.4
Ah.13g071610 Amaranthus hybridus HOM05D005574 ORTHO05D007102 5.1e-74 282.3 348 45.4
THA.LOC104800960 Tarenaya hassleriana HOM05D005574 ORTHO05D007102 8.7e-74 281.6 350 45.7
PGR142G0953 Punica granatum HOM05D005574 ORTHO05D007102 4.8e-72 275.8 334 47.9
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 8.1e-72 275.0 331 45.0
CARHR004930 Cardamine hirsuta HOM05D005574 ORTHO05D007102 2.4e-71 273.5 350 45.1
EL10Ac3g06494 Beta vulgaris HOM05D005574 ORTHO05D007102 5.3e-71 272.3 361 42.9
Sp1g04310 Schrenkiella parvula HOM05D005574 ORTHO05D007102 5.3e-71 272.3 350 44.3
BcaB02g06860 Brassica carinata HOM05D005574 ORTHO05D007102 1.5e-70 270.8 357 44.5
BraA10t42684Z Brassica rapa HOM05D005574 ORTHO05D007102 1.7e-69 267.3 338 44.7
AUR62033680 Chenopodium quinoa HOM05D005574 ORTHO05D007102 2.2e-69 266.9 316 46.5
A10p04140 Brassica napus HOM05D005574 ORTHO05D007102 8.4e-69 265.0 338 44.7
Lsat_1_v5_gn_5_104360 Lactuca sativa HOM05D005574 ORTHO05D007102 3.2e-68 263.1 332 44.9
BcaC05g24386 Brassica carinata HOM05D005574 ORTHO05D007102 4.2e-68 262.7 345 44.6
C05p03780 Brassica napus HOM05D005574 ORTHO05D007102 4.2e-68 262.7 345 44.6
BolC5t29155H Brassica oleracea HOM05D005574 ORTHO05D007102 4.2e-68 262.7 345 44.6
ECA234G0493 Erigeron canadensis HOM05D005574 ORTHO05D007102 9.3e-68 261.5 361 46.0
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 3.7e-64 249.6 308 44.5
Carub.0001s0477 Capsella rubella HOM05D005574 ORTHO05D007102 3.1e-63 246.5 347 41.8
CDE07G0532 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.0e-61 241.5 331 41.7
CAN.G2204.2 Capsicum annuum HOM05D000340 ORTHO05D007102 5.5e-60 235.7 197 57.4
HanXRQChr10g0294751 Helianthus annuus HOM05D005574 ORTHO05D007102 2.1e-59 233.8 337 42.1
CAN.G2204.4 Capsicum annuum HOM05D005574 ORTHO05D007102 2.5e-57 226.9 273 45.4
MBI15_g31435_MAGBIO Magnolia biondii HOM05D005574 ORTHO05D007102 1.6e-56 224.2 252 47.6
ATR0697G187 Amborella trichopoda HOM05D005574 ORTHO05D007102 6.3e-56 222.2 335 39.1
AT1G05440 Arabidopsis thaliana HOM05D005574 ORTHO05D007102 2.4e-55 220.3 364 39.3
unitig_32.g11728 Utricularia gibba HOM05D005574 ORTHO05D007102 3.3e-49 199.9 347 40.3
HPP92_009613 Vanilla planifolia HOM05D005574 ORTHO05D007102 1.1e-44 184.9 317 36.6
Zm00001eb057090 Zea mays HOM05D005574 ORTHO05D007102 1.4e-44 184.5 321 35.2
SEGI_38250 Sequoiadendron giganteum HOM05D005574 ORTHO05D007102 2.5e-44 183.7 347 33.4
CDE06G2673 Ceratophyllum demersum HOM05D005574 ORTHO05D007102 1.0e-42 178.3 268 42.5
Os03g0747100 Oryza sativa ssp. japonica HOM05D005574 ORTHO05D007102 3.3e-41 173.3 327 35.8
Actinidia40140 Actinidia chinensis HOM05D005574 ORTHO05D007102 3.7e-40 169.9 141 59.6
Cpa.g.sc58.90 Carica papaya HOM05D005574 ORTHO05D007102 6.9e-39 165.6 131 59.5
ECA234G4095 Erigeron canadensis HOM05D005574 ORTHO05D007102 3.2e-36 156.8 173 46.2
BolC1t04542H Brassica oleracea HOM05D005574 ORTHO05D007102 4.7e-35 152.9 182 41.8
BolC5t33236H Brassica oleracea HOM05D005574 ORTHO05D007102 3.0e-34 150.2 173 43.4
C01p35960 Brassica napus HOM05D005574 ORTHO05D007102 5.7e-33 146.0 147 47.6
SMO174G0025 Selaginella moellendorffii HOM05D005574 ORTHO05D007102 5.3e-31 139.4 306 31.0
AagrBONN_evm.TU.Sc2ySwM_117.3111 Anthoceros agrestis HOM05D005574 ORTHO05D007102 5.5e-28 129.4 265 32.8
C03p05690 Brassica napus HOM05D005574 ORTHO05D022054 2.7e-27 127.1 102 55.9
Haze_20405 Corylus avellana HOM05D005574 ORTHO05D007102 2.2e-24 117.5 68 82.4
BolC1t03554H Brassica oleracea HOM05D005574 ORTHO05D022054 8.2e-24 115.5 94 55.3
BcaC07g42131 Brassica carinata HOM05D005574 ORTHO05D007102 8.5e-21 105.5 109 45.9
C08p51720 Brassica napus HOM05D005574 ORTHO05D007102 8.5e-21 105.5 109 45.9
BcaB07g33702 Brassica carinata HOM05D005574 ORTHO05D007102 1.6e-19 101.3 198 33.8
A09p67440 Brassica napus HOM05D005574 ORTHO05D007102 2.7e-19 100.5 96 50.0
BcaC09g49493 Brassica carinata HOM05D005574 ORTHO05D007102 8.0e-19 99.0 132 40.2
A03p47670 Brassica napus HOM05D005574 ORTHO05D007102 1.8e-18 97.8 108 46.3
BraA09t37853Z Brassica rapa HOM05D005574 ORTHO05D007102 1.8e-18 97.8 108 46.3
A02p27770 Brassica napus HOM05D005574 ORTHO05D007102 8.8e-18 95.5 109 44.0
BraA02t07818Z Brassica rapa HOM05D005574 ORTHO05D007102 8.8e-18 95.5 109 44.0
BolC3t13081H Brassica oleracea HOM05D005574 ORTHO05D007102 1.2e-17 95.1 108 45.4
BraA07t27929Z Brassica rapa HOM05D005574 ORTHO05D007102 2.0e-17 94.4 109 43.1
BraA09t41109Z Brassica rapa HOM05D005574 ORTHO05D007102 1.7e-16 91.3 89 53.9
C01p45800 Brassica napus HOM05D005574 ORTHO05D007102 3.1e-15 87.0 156 31.4
A09p57160 Brassica napus HOM05D005574 ORTHO05D007102 7.0e-15 85.9 61 67.2
Sabra08G0117800 Salix brachista HOM05D000633 ORTHO05D000477 7.0e-15 85.9 86 50.0
BcaC09g48798 Brassica carinata HOM05D005574 ORTHO05D007102 1.3e-13 81.6 98 41.8
BcaC07g42130 Brassica carinata HOM05D005574 ORTHO05D007102 4.4e-09 66.6 108 39.8


User provided reference genes

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