Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00856 Corylus avellana HOM05D005635 ORTHO05D006838 0.0e+00 1412.5 758 100.0
Cfa015678 Carpinus fangiana HOM05D005635 ORTHO05D006838 0.0e+00 1093.2 763 82.4
QL10p057166 Quercus lobata HOM05D005635 ORTHO05D006838 7.8e-242 840.9 765 63.9
QL10p057536 Quercus lobata HOM05D005635 ORTHO05D006838 6.6e-241 837.8 765 63.8
CiPaw.01G169400 Carya illinoinensis HOM05D005635 ORTHO05D006838 1.9e-232 809.7 763 62.4
MD15G1148200 Malus domestica HOM05D005635 ORTHO05D006838 6.1e-194 681.8 768 53.4
Potri.013G128300 Populus trichocarpa HOM05D005635 ORTHO05D006838 3.4e-189 666.0 762 52.1
Cpa.g.sc9.387 Carica papaya HOM05D005635 ORTHO05D006838 1.1e-187 661.0 764 51.4
Duzib151G1049 Durio zibethinus HOM05D005635 ORTHO05D006838 2.3e-185 653.3 764 52.1
FAN23G1844 Fragaria x ananassa HOM05D005635 ORTHO05D006838 2.1e-178 630.2 766 52.0
TAR362G0201 Trochodendron aralioides HOM05D005635 ORTHO05D006838 2.1e-178 630.2 769 52.0
FvH4_1g00540 Fragaria vesca HOM05D005635 ORTHO05D006838 6.1e-178 628.6 766 51.3
Duzib212G0953 Durio zibethinus HOM05D005635 ORTHO05D006838 1.4e-177 627.5 764 50.0
GSVIVG01038182001 Vitis vinifera HOM05D005635 ORTHO05D006838 2.3e-177 626.7 764 51.2
MD02G1004500 Malus domestica HOM05D005635 ORTHO05D006838 2.6e-176 623.2 769 50.3
RcHm_v2.0_Chr2g0085171 Rosa chinensis HOM05D005635 ORTHO05D006838 7.4e-176 621.7 764 51.6
FAN26G0446 Fragaria x ananassa HOM05D005635 ORTHO05D006838 5.3e-174 615.5 766 50.8
Manes.05G131200 Manihot esculenta HOM05D005635 ORTHO05D006838 1.0e-172 611.3 764 49.9
Thecc.04G163300 Theobroma cacao HOM05D005635 ORTHO05D006838 3.8e-172 609.4 764 49.3
Gorai.006G232500 Gossypium raimondii HOM05D005635 ORTHO05D006838 9.4e-171 604.7 764 49.2
TWI15G0946 Tripterygium wilfordii HOM05D005635 ORTHO05D006838 2.3e-169 600.1 763 48.5
Gohir.D09G212700 Gossypium hirsutum HOM05D005635 ORTHO05D006838 8.8e-169 598.2 764 48.8
Gohir.A09G213616 Gossypium hirsutum HOM05D005635 ORTHO05D006838 2.0e-168 597.0 764 48.8
FAN28G2262 Fragaria x ananassa HOM05D005635 ORTHO05D006838 5.7e-168 595.5 766 49.9
Prupe.7G266600 Prunus persica HOM05D005635 ORTHO05D006838 3.8e-164 582.8 681 53.2
CSS0001444 Camellia sinensis var. sinensis HOM05D005635 ORTHO05D006838 2.7e-162 576.6 761 47.4
Gohir.D10G121800 Gossypium hirsutum HOM05D005635 ORTHO05D006838 4.1e-158 562.8 764 47.5
Glyma.18G001800 Glycine max HOM05D005635 ORTHO05D006838 1.2e-157 561.2 761 46.6
Gohir.A10G145200 Gossypium hirsutum HOM05D005635 ORTHO05D006838 1.6e-157 560.8 764 47.5
Gorai.011G133900 Gossypium raimondii HOM05D005635 ORTHO05D006838 1.6e-157 560.8 764 47.4
Nn7g37529 Nelumbo nucifera HOM05D005635 ORTHO05D006838 3.8e-156 556.2 771 46.3
Glyma.11G255300 Glycine max HOM05D005635 ORTHO05D006838 2.5e-155 553.5 757 45.8
Dinv18319 Davidia involucrata HOM05D005635 ORTHO05D006838 1.2e-154 551.2 687 50.2
CANSAT56G0139 Cannabis sativa HOM05D005635 ORTHO05D006838 1.6e-154 550.8 764 46.3
Atru.chr4.1471 Acer truncatum HOM05D005635 ORTHO05D006838 6.1e-154 548.9 643 53.0
THA.LOC104802334 Tarenaya hassleriana HOM05D005635 ORTHO05D006838 1.5e-152 544.3 772 42.9
VMungo1383G0014 Vigna mungo HOM05D005635 ORTHO05D006838 4.9e-151 539.3 759 44.5
arahy.Tifrunner.gnm1.ann1.KV01DF Arachis hypogaea HOM05D005635 ORTHO05D006838 3.1e-150 536.6 766 43.3
MELO3C010738.2 Cucumis melo HOM05D005635 ORTHO05D006838 3.1e-150 536.6 765 45.2
arahy.Tifrunner.gnm1.ann1.0WSK8D Arachis hypogaea HOM05D005635 ORTHO05D006838 2.7e-149 533.5 705 44.8
Lj6g0024009 Lotus japonicus HOM05D005635 ORTHO05D006838 7.7e-149 531.9 757 46.0
Medtr3g084030 Medicago truncatula HOM05D005635 ORTHO05D006838 1.3e-148 531.2 755 45.4
ClCG08G017200 Citrullus lanatus HOM05D005635 ORTHO05D006838 2.5e-147 526.9 784 45.2
MBI07_g33481_MAGBIO Magnolia biondii HOM05D005635 ORTHO05D006838 3.6e-146 523.1 801 44.8
Phvul.001G267200 Phaseolus vulgaris HOM05D005635 ORTHO05D006838 4.7e-146 522.7 756 43.5
Sopen03g013370 Solanum pennellii HOM05D005635 ORTHO05D006838 6.1e-146 522.3 758 44.3
Sabra13G0107200 Salix brachista HOM05D005635 ORTHO05D006838 8.9e-145 518.5 857 41.8
Hma1.2p1_1156F.1_g262300 Hydrangea macrophylla HOM05D005635 ORTHO05D006838 1.2e-144 518.1 775 45.7
Ca_16400_v3 Cicer arietinum L. HOM05D005635 ORTHO05D006838 5.7e-144 515.8 714 45.0
Eucgr.L00011 Eucalyptus grandis HOM05D005635 ORTHO05D006838 3.2e-142 510.0 779 44.2
Sed0015570 Sechium edule HOM05D005635 ORTHO05D006838 1.2e-141 508.1 759 44.0
CsaV3_2G025410 Cucumis sativus L. HOM05D005635 ORTHO05D006838 1.6e-141 507.7 766 44.1
BolC6t37802H Brassica oleracea HOM05D005635 ORTHO05D006838 2.5e-139 500.4 750 40.4
Rhsim09G0007900 Rhododendron simsii HOM05D005635 ORTHO05D006838 5.6e-139 499.2 744 45.6
AL5G41820 Arabidopsis lyrata HOM05D005635 ORTHO05D006838 1.6e-138 497.7 793 40.9
Peaxi162Scf00883g00320 Petunia axillaris HOM05D005635 ORTHO05D006838 2.1e-138 497.3 779 41.1
Sp5g03370 Schrenkiella parvula HOM05D005635 ORTHO05D006838 1.4e-137 494.6 796 40.2
PSO832G1829 Papaver somniferum HOM05D005635 ORTHO05D006838 2.6e-136 490.3 774 42.8
Aqoxy5G00015 Aquilegia oxysepala HOM05D005635 ORTHO05D006838 7.5e-136 488.8 670 44.9
AT3G59780 Arabidopsis thaliana HOM05D005635 ORTHO05D006838 1.3e-135 488.0 804 40.7
Thhalv10005829m.g Eutrema salsugineum HOM05D005635 ORTHO05D006838 3.2e-134 483.4 775 41.8
AUR62002413 Chenopodium quinoa HOM05D005635 ORTHO05D006838 9.2e-134 481.9 782 40.7
Aa31LG10G14030 Aethionema arabicum HOM05D005635 ORTHO05D006838 1.7e-132 477.6 635 44.6
BcaC08g45005 Brassica carinata HOM05D005635 ORTHO05D006838 3.0e-132 476.9 741 39.5
DCAR_029617 Daucus carota HOM05D005635 ORTHO05D006838 3.9e-132 476.5 646 45.5
Lj3C160T4 Lonicera japonica HOM05D005635 ORTHO05D006838 3.9e-132 476.5 644 48.0
C06p26400 Brassica napus HOM05D005635 ORTHO05D006838 2.1e-130 470.7 741 39.4
Psat5g100720 Pisum sativum HOM05D005635 ORTHO05D006838 2.8e-130 470.3 755 43.0
Hund22526 Selenicereus undatus HOM05D005635 ORTHO05D006838 7.5e-128 462.2 764 39.9
PSO210G4833 Papaver somniferum HOM05D005635 ORTHO05D006838 9.8e-128 461.8 774 41.7
A07p24820 Brassica napus HOM05D005635 ORTHO05D006838 1.4e-126 458.0 590 46.4
BraA07t30126Z Brassica rapa HOM05D005635 ORTHO05D006838 1.4e-126 458.0 751 38.1
AUR62023776 Chenopodium quinoa HOM05D005635 ORTHO05D006838 1.4e-126 458.0 759 39.8
BcaB02g07447 Brassica carinata HOM05D005635 ORTHO05D006838 2.7e-125 453.8 792 37.0
Cc03_g14460 Coffea canephora HOM05D005635 ORTHO05D006838 6.0e-125 452.6 765 40.0
CARHR170120 Cardamine hirsuta HOM05D005635 ORTHO05D006838 1.1e-123 448.4 739 41.7
EL10Ac3g06107 Beta vulgaris HOM05D005635 ORTHO05D006838 2.5e-123 447.2 767 41.1
SalBow7G2884 Salvia bowleyana HOM05D005635 ORTHO05D006838 5.2e-121 439.5 759 40.2
Lalb_Chr23g0278351 Lupinus albus HOM05D005635 ORTHO05D006838 7.6e-120 435.6 605 45.8
Sc19g0006380 Simmondsia chinensis HOM05D005635 ORTHO05D006838 1.4e-118 431.4 774 40.4
Migut.D00990 Erythranthe guttata HOM05D005635 ORTHO05D006838 4.6e-117 426.4 565 45.1
Nitab4.5_0002913g0010 Nicotiana tabacum HOM05D005635 ORTHO05D006838 1.8e-113 414.5 589 44.7
Nitab4.5_0000064g0020 Nicotiana tabacum HOM05D005635 ORTHO05D006838 2.9e-111 407.1 631 43.6
HanXRQChr02g0059091 Helianthus annuus HOM05D005635 ORTHO05D006838 4.9e-111 406.4 577 43.7
Sed0022147 Sechium edule HOM05D005635 ORTHO05D006838 1.2e-109 401.7 766 39.4
Solyc03g059180.4 Solanum lycopersicum HOM05D005635 ORTHO05D006838 3.3e-107 393.7 658 40.0
vmacro00684 Vaccinium macrocarpon HOM05D005635 ORTHO05D006838 2.8e-106 390.6 624 42.9
Lsat_1_v5_gn_6_67720 Lactuca sativa HOM05D005635 ORTHO05D006838 1.1e-105 388.7 564 44.0
PGR042G2382 Punica granatum HOM05D005635 ORTHO05D006838 3.1e-105 387.1 639 43.2
Hma1.2p1_1156F.1_g262310 Hydrangea macrophylla HOM05D005635 ORTHO05D006838 6.0e-101 372.9 440 49.3
HPP92_007033 Vanilla planifolia HOM05D005635 ORTHO05D006838 8.7e-100 369.0 774 34.2
ATR0743G254 Amborella trichopoda HOM05D005635 ORTHO05D006838 1.9e-99 367.9 764 34.7
SGA_v2.0_scaffold66G22529 Striga asiatica HOM05D005635 ORTHO05D006838 5.6e-99 366.3 759 35.0
TPR.G17194 Trifolium pratense HOM05D005635 ORTHO05D006838 1.3e-98 365.2 636 39.3
HPP92_007065 Vanilla planifolia HOM05D005635 ORTHO05D006838 1.6e-98 364.8 774 34.1
Os01g0896500 Oryza sativa ssp. japonica HOM05D005635 ORTHO05D006838 4.9e-95 353.2 591 38.2
Zm00001eb144770 Zea mays HOM05D005635 ORTHO05D006838 4.2e-94 350.1 543 39.0
ECA233G1690 Erigeron canadensis HOM05D005635 ORTHO05D006838 1.2e-93 348.6 506 45.1
Oeu017118.1 Olea europaea HOM05D005635 ORTHO05D006838 5.7e-83 313.2 378 51.1
unitig_32.g10984 Utricularia gibba HOM05D005635 ORTHO05D006838 2.4e-81 307.8 616 36.7
Atru.chr4.1498 Acer truncatum HOM05D005635 ORTHO05D006838 1.3e-74 285.4 318 54.1
SEGI_21812 Sequoiadendron giganteum HOM05D005635 ORTHO05D006838 1.3e-74 285.4 586 34.0
CAN.G207.4 Capsicum annuum HOM05D005635 ORTHO05D006838 3.3e-67 260.8 365 41.4
SalBow1G7464 Salvia bowleyana HOM05D005635 ORTHO05D006838 2.2e-63 248.1 444 37.8
Mapoly0056s0110 Marchantia polymorpha HOM05D005635 ORTHO05D006838 5.5e-54 216.9 465 33.3
Carub.0005s2650 Capsella rubella HOM05D005635 ORTHO05D006838 1.2e-51 209.1 191 58.6
Pp3c5_10150 Physcomitrium patens HOM05D005635 ORTHO05D006838 2.0e-51 208.4 501 29.9
Atru.chr4.1500 Acer truncatum HOM05D005635 ORTHO05D006838 2.2e-50 204.9 285 50.2
Carub.0005s2649 Capsella rubella HOM05D005635 ORTHO05D006838 3.5e-48 197.6 411 35.0
CBR_g30747 Chara braunii HOM05D005635 ORTHO05D006838 2.2e-34 151.8 561 27.3
Potri.019G098001 Populus trichocarpa HOM05D005635 ORTHO05D006838 2.3e-31 141.7 254 39.8
TPR.G35147 Trifolium pratense HOM05D005635 ORTHO05D006838 2.0e-27 128.6 98 67.3
Potri.019G097901 Populus trichocarpa HOM05D005635 ORTHO05D006838 3.4e-27 127.9 135 60.7
AagrBONN_evm.TU.Sc2ySwM_344.4224 Anthoceros agrestis HOM05D005635 ORTHO05D006838 5.7e-27 127.1 413 25.7
Solyc03g059170.2 Solanum lycopersicum HOM05D005635 ORTHO05D006838 5.7e-27 127.1 135 56.3
Potri.019G095833 Populus trichocarpa HOM05D005635 ORTHO05D006838 2.9e-26 124.8 135 57.8
VMungo1127G1500 Vigna mungo HOM05D005635 ORTHO05D006838 7.0e-25 120.2 81 71.6
Potri.014G182410 Populus trichocarpa HOM05D005635 ORTHO05D006838 4.6e-24 117.5 123 53.7
Ca_19887_v3 Cicer arietinum L. HOM05D005635 ORTHO05D006838 2.8e-21 108.2 149 43.0
CARHR151070 Cardamine hirsuta HOM05D005635 ORTHO05D006838 1.4e-20 105.9 179 37.4
Oeu023600.1 Olea europaea HOM05D005635 ORTHO05D006838 1.1e-17 96.3 86 64.0
C08p34730 Brassica napus HOM05D005635 ORTHO05D006838 2.4e-17 95.1 72 65.3
BolC8t51075H Brassica oleracea HOM05D005635 ORTHO05D006838 1.7e-15 89.0 81 56.8
BcaC07g40503 Brassica carinata HOM05D005635 ORTHO05D006838 3.3e-14 84.7 51 78.4
Atru.chr4.1499 Acer truncatum HOM05D005635 ORTHO05D006838 9.5e-14 83.2 47 80.9
PGR044G0369 Punica granatum HOM05D005635 ORTHO05D006838 4.7e-13 80.9 71 62.0
BcaC07g40447 Brassica carinata HOM05D005635 ORTHO05D006838 1.4e-12 79.3 52 76.9
CARHR183720 Cardamine hirsuta HOM05D005635 ORTHO05D006838 5.2e-12 77.4 121 38.0
CSS0016204 Camellia sinensis var. sinensis HOM05D005635 ORTHO05D006838 4.4e-11 74.3 46 76.1
BcaB02g07446 Brassica carinata HOM05D000137 ORTHO05D021629 4.9e-10 70.9 61 55.7
C06p26410 Brassica napus HOM05D000137 ORTHO05D021629 1.3e-07 62.8 92 47.8
Potri.019G098950 Populus trichocarpa HOM05D005635 ORTHO05D006838 1.3e-07 62.8 64 51.6
RcHm_v2.0_Chr6g0284261 Rosa chinensis HOM05D005635 ORTHO05D006838 1.3e-07 62.8 41 65.9
A07p24830 Brassica napus HOM05D000137 ORTHO05D021629 8.6e-07 60.1 62 58.1
BraA07t30127Z Brassica rapa HOM05D000137 ORTHO05D021629 4.3e-06 57.8 62 54.8


User provided reference genes

Program Settings