Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 4.0e-199 698.0 369 100.0
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 2.1e-123 446.4 368 69.0
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 1.3e-104 384.0 397 59.7
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 7.8e-78 295.0 270 64.8
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 1.1e-71 274.6 386 48.7
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.0e-69 268.1 387 47.3
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 3.0e-69 266.5 384 48.4
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 3.7e-64 249.6 349 49.0
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 2.1e-62 243.8 387 44.2
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 5.1e-61 239.2 383 42.6
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 2.5e-60 236.9 388 43.3
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 6.8e-58 228.8 404 44.8
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 6.8e-58 228.8 391 42.5
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 8.9e-58 228.4 385 42.6
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 1.2e-57 228.0 387 43.2
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 1.4e-55 221.1 385 42.1
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 2.4e-55 220.3 368 44.6
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 5.4e-55 219.2 306 48.7
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 3.3e-52 209.9 388 43.8
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 9.6e-52 208.4 394 39.8
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 2.6e-49 200.3 397 37.0
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 5.8e-49 199.1 395 40.0
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 2.2e-48 197.2 416 40.6
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 1.4e-47 194.5 353 43.6
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 3.2e-47 193.4 371 40.2
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 3.5e-46 189.9 326 39.6
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 6.0e-46 189.1 391 38.6
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 7.8e-46 188.7 427 36.8
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 1.3e-45 188.0 313 42.8
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 1.1e-44 184.9 409 37.4
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 3.3e-44 183.3 401 37.2
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 7.3e-44 182.2 368 38.0
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 1.6e-43 181.0 389 38.3
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 6.2e-43 179.1 383 36.3
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 1.4e-42 177.9 375 34.9
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 9.0e-42 175.3 380 36.6
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 1.5e-41 174.5 373 37.8
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 7.6e-41 172.2 387 38.0
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 3.8e-40 169.9 374 37.7
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 8.4e-40 168.7 434 33.2
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 1.1e-39 168.3 367 35.7
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 1.1e-39 168.3 378 34.4
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 2.4e-39 167.2 429 33.8
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 4.2e-39 166.4 388 37.4
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 4.2e-39 166.4 386 35.8
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 7.1e-39 165.6 388 38.1
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 7.1e-39 165.6 384 34.9
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 9.3e-39 165.2 387 33.9
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 9.3e-39 165.2 285 43.2
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 1.2e-38 164.9 387 36.4
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 1.6e-38 164.5 388 32.7
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 2.1e-38 164.1 340 36.5
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 3.5e-38 163.3 387 33.1
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 3.5e-38 163.3 380 35.0
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 3.5e-38 163.3 379 33.5
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 6.0e-38 162.5 351 39.3
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 6.0e-38 162.5 335 36.4
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 7.8e-38 162.2 386 36.3
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 1.0e-37 161.8 385 34.0
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 2.3e-37 160.6 350 38.6
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 3.0e-37 160.2 382 37.7
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 3.9e-37 159.8 378 32.8
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 3.9e-37 159.8 378 32.8
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 5.1e-37 159.5 361 34.3
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 6.6e-37 159.1 348 39.1
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 6.6e-37 159.1 369 37.7
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 1.5e-36 157.9 374 34.8
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 3.3e-36 156.8 421 35.6
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 4.3e-36 156.4 348 38.2
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 1.6e-35 154.5 424 34.9
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 3.6e-35 153.3 375 35.5
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 3.6e-35 153.3 388 32.0
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 8.1e-35 152.1 393 32.3
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 1.4e-34 151.4 365 35.3
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 5.3e-34 149.4 331 36.0
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 9.0e-34 148.7 367 35.4
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 2.0e-33 147.5 317 34.7
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 3.4e-33 146.7 330 34.8
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 7.6e-33 145.6 312 38.8
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 1.3e-32 144.8 379 34.3
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 2.2e-32 144.1 362 34.3
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 2.2e-32 144.1 299 39.8
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 3.8e-32 143.3 331 32.9
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 4.9e-32 142.9 323 36.2
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 6.4e-32 142.5 269 40.1
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 1.1e-31 141.7 358 34.6
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 1.9e-31 141.0 372 34.1
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 1.9e-31 141.0 365 32.9
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 2.4e-31 140.6 349 34.4
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 4.2e-31 139.8 350 33.7
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 4.2e-31 139.8 382 34.3
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 1.0e-29 135.2 323 31.9
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 4.3e-28 129.8 382 33.0
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 8.1e-27 125.6 380 35.0
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 1.4e-26 124.8 235 43.0
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 4.0e-26 123.2 383 33.9
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 4.0e-26 123.2 346 32.1
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 9.0e-26 122.1 342 31.0
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 2.0e-25 120.9 381 32.5
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 2.9e-24 117.1 351 31.9
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 1.1e-23 115.2 385 31.2
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.2e-22 111.7 96 57.3
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 1.2e-22 111.7 336 33.0
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 1.6e-22 111.3 382 30.9
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 7.9e-22 109.0 368 31.5
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 8.7e-21 105.5 210 38.6
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 1.1e-20 105.1 291 34.4
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 1.5e-20 104.8 198 40.4
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 1.9e-20 104.4 439 27.8
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 1.6e-19 101.3 90 60.0
Haze_22906 Corylus avellana HOM05D002885 ORTHO05D003350 6.2e-19 99.4 69 72.5
FAN07G1029 Fragaria x ananassa HOM05D005773 ORTHO05D006930 6.9e-18 95.9 167 40.7
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 1.9e-15 87.8 383 28.2
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 3.2e-15 87.0 393 30.0
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 5.5e-15 86.3 93 51.6
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 3.5e-14 83.6 311 28.3
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 4.6e-14 83.2 365 28.8
TAR624G0439 Trochodendron aralioides HOM05D005773 ORTHO05D006930 1.4e-10 71.6 116 38.8
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 3.1e-10 70.5 50 60.0
FAN12G0946 Fragaria x ananassa HOM05D005773 ORTHO05D046089 6.9e-10 69.3 186 33.3
FvH4_4g21660 Fragaria vesca HOM05D005773 ORTHO05D046089 7.7e-09 65.9 150 32.7
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 1.7e-08 64.7 151 34.4
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 1.9e-07 61.2 56 51.8
Aqoxy1G04021 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.6e-06 58.2 58 51.7
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 1.6e-06 58.2 340 25.0
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 2.1e-06 57.8 340 25.0
Atru.chr9.2474 Acer truncatum HOM05D000366 ORTHO05D001950 2.7e-06 57.4 76 39.5


User provided reference genes

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