Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 1.5e-35 152.1 69 100.0
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 7.8e-24 113.2 56 94.6
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 2.0e-19 98.6 56 85.7
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 2.2e-18 95.1 56 83.9
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.9e-17 92.0 56 78.6
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 3.2e-17 91.3 57 78.9
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 9.3e-17 89.7 57 77.2
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 1.2e-16 89.4 55 78.2
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 2.7e-16 88.2 56 78.6
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 2.7e-16 88.2 55 76.4
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 3.5e-16 87.8 56 76.8
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 4.6e-16 87.4 56 76.8
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 7.8e-16 86.7 58 74.1
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.0e-15 86.3 56 71.4
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 1.3e-15 85.9 56 69.6
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.7e-15 85.5 56 69.6
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.7e-15 85.5 56 76.8
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 1.7e-15 85.5 55 76.4
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 2.3e-15 85.1 60 71.7
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.0e-15 84.7 56 76.8
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 3.0e-15 84.7 56 76.8
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 3.0e-15 84.7 56 76.8
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 3.0e-15 84.7 57 75.4
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 3.0e-15 84.7 56 71.4
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 6.6e-15 83.6 56 75.0
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 8.7e-15 83.2 62 72.6
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 1.1e-14 82.8 55 74.5
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 1.5e-14 82.4 61 70.5
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 1.9e-14 82.0 59 76.3
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 1.9e-14 82.0 57 71.9
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 3.3e-14 81.3 56 69.6
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 4.3e-14 80.9 56 67.9
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 4.3e-14 80.9 58 77.6
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 5.6e-14 80.5 65 61.5
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 5.6e-14 80.5 56 73.2
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 7.3e-14 80.1 56 75.0
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 9.6e-14 79.7 57 71.9
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.6e-13 79.0 56 71.4
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 2.8e-13 78.2 57 66.7
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 2.8e-13 78.2 56 66.1
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 3.6e-13 77.8 56 67.9
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 4.8e-13 77.4 56 69.6
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 6.2e-13 77.0 63 63.5
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 6.2e-13 77.0 58 72.4
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 1.1e-12 76.3 57 66.7
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 1.4e-12 75.9 56 73.2
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 1.8e-12 75.5 56 67.9
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 3.1e-12 74.7 55 67.3
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 3.1e-12 74.7 58 67.2
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 3.1e-12 74.7 57 68.4
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 6.9e-12 73.6 56 66.1
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 6.9e-12 73.6 56 67.9
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 9.0e-12 73.2 57 66.7
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 9.0e-12 73.2 57 71.9
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.5e-11 72.4 58 67.2
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 1.5e-11 72.4 56 66.1
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 1.5e-11 72.4 55 67.3
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 2.6e-11 71.6 60 63.3
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 3.4e-11 71.2 58 67.2
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 5.8e-11 70.5 57 64.9
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 5.8e-11 70.5 56 64.3
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.8e-11 70.5 56 64.3
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 5.8e-11 70.5 56 64.3
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 7.6e-11 70.1 56 67.9
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 7.6e-11 70.1 55 63.6
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 7.6e-11 70.1 59 64.4
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 9.9e-11 69.7 58 63.8
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 9.9e-11 69.7 56 64.3
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 1.3e-10 69.3 56 58.9
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 2.9e-10 68.2 58 62.1
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 6.4e-10 67.0 60 60.0
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 6.4e-10 67.0 55 67.3
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 6.4e-10 67.0 56 62.5
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 6.4e-10 67.0 58 70.7
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 6.4e-10 67.0 60 60.0
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 1.1e-09 66.2 57 63.2
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.4e-09 65.9 57 63.2
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 1.4e-09 65.9 56 60.7
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.9e-09 65.5 60 58.3
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 1.9e-09 65.5 60 58.3
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 3.2e-09 64.7 58 63.8
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 4.2e-09 64.3 64 53.1
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 1.2e-08 62.8 59 54.2
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.6e-08 62.4 59 54.2
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 1.6e-08 62.4 63 54.0
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 2.1e-08 62.0 63 54.0
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 2.1e-08 62.0 63 54.0
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.1e-08 62.0 57 54.4
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.7e-08 61.6 57 56.1
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 2.7e-08 61.6 63 54.0
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 3.5e-08 61.2 60 55.0
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 3.5e-08 61.2 59 52.5
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-08 61.2 59 52.5
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 3.5e-08 61.2 59 52.5
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 3.5e-08 61.2 59 52.5
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 3.5e-08 61.2 59 52.5
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 4.6e-08 60.8 63 55.6
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 4.6e-08 60.8 66 50.0
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 4.6e-08 60.8 59 55.9
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 4.6e-08 60.8 62 51.6
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 6.0e-08 60.5 59 52.5
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 6.0e-08 60.5 63 52.4
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 6.0e-08 60.5 63 52.4
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 6.0e-08 60.5 59 55.9
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 6.0e-08 60.5 63 54.0
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 7.9e-08 60.1 63 55.6
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 7.9e-08 60.1 61 55.7
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-07 59.7 63 52.4
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 1.3e-07 59.3 64 51.6
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 1.3e-07 59.3 59 50.8
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 1.3e-07 59.3 59 50.8
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 1.3e-07 59.3 59 50.8
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 1.8e-07 58.9 59 54.2
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 1.8e-07 58.9 59 54.2
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 1.8e-07 58.9 59 54.2
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 2.3e-07 58.5 64 51.6
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 2.3e-07 58.5 59 54.2
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 2.3e-07 58.5 64 51.6
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 2.3e-07 58.5 59 54.2
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 3.0e-07 58.2 66 50.0
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 3.0e-07 58.2 56 53.6
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 3.0e-07 58.2 59 50.8
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 3.9e-07 57.8 63 54.0
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 3.9e-07 57.8 63 54.0
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 3.9e-07 57.8 66 48.5
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.1e-07 57.4 71 49.3
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 8.7e-07 56.6 63 50.8
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 8.7e-07 56.6 63 50.8
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 8.7e-07 56.6 63 50.8
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 8.7e-07 56.6 63 50.8
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 1.1e-06 56.2 60 55.0
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 1.1e-06 56.2 55 61.8
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.9e-06 55.5 62 50.0
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 2.5e-06 55.1 54 53.7
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 2.5e-06 55.1 54 55.6
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 4.3e-06 54.3 54 53.7
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 4.3e-06 54.3 55 54.5
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 4.3e-06 54.3 64 46.9
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 7.4e-06 53.5 56 55.4
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 7.4e-06 53.5 55 50.9


User provided reference genes

Program Settings