Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00739 Corylus avellana HOM05D000925 ORTHO05D001623 3.1e-134 481.9 254 100.0
Cfa015766 Carpinus fangiana HOM05D008684 ORTHO05D010796 3.6e-42 176.0 90 96.7
CiPaw.01G102100 Carya illinoinensis HOM05D000925 ORTHO05D001623 6.0e-29 132.1 92 72.8
CiPaw.02G056000 Carya illinoinensis HOM05D000925 ORTHO05D001623 1.8e-25 120.6 90 66.7
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 2.2e-23 113.6 70 80.0
QL10p048174 Quercus lobata HOM05D000925 ORTHO05D001623 9.6e-19 98.2 108 59.3
Prupe.1G189800 Prunus persica HOM05D000925 ORTHO05D001623 1.2e-16 91.3 94 55.3
Gohir.A01G230900 Gossypium hirsutum HOM05D000925 ORTHO05D001623 1.5e-11 74.3 98 50.0
Gohir.D01G221000 Gossypium hirsutum HOM05D000925 ORTHO05D001623 1.5e-11 74.3 98 50.0
Gorai.002G267600 Gossypium raimondii HOM05D000925 ORTHO05D001623 1.5e-11 74.3 98 50.0
Manes.04G041140 Manihot esculenta HOM05D000925 ORTHO05D001623 3.3e-11 73.2 107 43.9
HanXRQChr14g0437011 Helianthus annuus HOM05D000925 ORTHO05D001623 4.8e-10 69.3 95 43.2
Hma1.2p1_0754F.1_g213120 Hydrangea macrophylla HOM05D000925 ORTHO05D001623 8.1e-10 68.6 91 47.3
Lsat_1_v5_gn_6_55301 Lactuca sativa HOM05D000925 ORTHO05D001623 1.4e-09 67.8 95 49.5
HanXRQChr02g0058001 Helianthus annuus HOM05D000925 ORTHO05D001623 1.8e-09 67.4 91 51.6
Manes.11G117600 Manihot esculenta HOM05D000925 ORTHO05D001623 1.8e-09 67.4 114 43.0
Cpa.g.sc71.14 Carica papaya HOM05D000925 ORTHO05D001623 3.1e-09 66.6 96 44.8
Atru.chr3.1556 Acer truncatum HOM05D000925 ORTHO05D001623 4.0e-09 66.2 101 43.6
Ciclev10022453m.g Citrus clementina HOM05D000925 ORTHO05D001623 4.0e-09 66.2 92 45.7
Potri.007G126700 Populus trichocarpa HOM05D000925 ORTHO05D001623 4.0e-09 66.2 107 40.2
CSS0038754 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D001623 5.3e-09 65.9 49 71.4
ClCG08G004360 Citrullus lanatus HOM05D000925 ORTHO05D001623 5.3e-09 65.9 93 43.0
Lsat_1_v5_gn_2_51320 Lactuca sativa HOM05D000925 ORTHO05D001623 6.9e-09 65.5 76 47.4
Potri.017G032800 Populus trichocarpa HOM05D000925 ORTHO05D001623 6.9e-09 65.5 118 41.5
Sopen06g029810 Solanum pennellii HOM05D000925 ORTHO05D001623 6.9e-09 65.5 74 52.7
Sabra17G0020600 Salix brachista HOM05D000925 ORTHO05D001623 9.0e-09 65.1 113 39.8
Solyc06g073450.4 Solanum lycopersicum HOM05D000925 ORTHO05D001623 9.0e-09 65.1 53 64.2
Lsat_1_v5_gn_1_71681 Lactuca sativa HOM05D000925 ORTHO05D001623 1.2e-08 64.7 77 46.8
HanXRQChr16g0502631 Helianthus annuus HOM05D000925 ORTHO05D001623 1.5e-08 64.3 59 54.2
Nitab4.5_0004579g0030 Nicotiana tabacum HOM05D000925 ORTHO05D001623 1.5e-08 64.3 63 55.6
CsaV3_6G003800 Cucumis sativus L. HOM05D000925 ORTHO05D001623 2.6e-08 63.5 82 46.3
MELO3C011635.2 Cucumis melo HOM05D000925 ORTHO05D001623 3.4e-08 63.2 82 45.1
ClCG07G015530 Citrullus lanatus HOM05D000925 ORTHO05D001623 4.5e-08 62.8 89 47.2
Sed0003267 Sechium edule HOM05D000925 ORTHO05D001623 4.5e-08 62.8 89 48.3
MELO3C017731.2 Cucumis melo HOM05D000925 ORTHO05D001623 5.8e-08 62.4 89 46.1
CsaV3_4G003160 Cucumis sativus L. HOM05D000925 ORTHO05D001623 7.6e-08 62.0 88 44.3
ECA233G2175 Erigeron canadensis HOM05D000925 ORTHO05D001623 7.6e-08 62.0 93 44.1
Dinv22715 Davidia involucrata HOM05D000925 ORTHO05D001623 9.9e-08 61.6 96 42.7
Duzib093G1454 Durio zibethinus HOM05D000925 ORTHO05D001623 1.3e-07 61.2 103 39.8
Nitab4.5_0002368g0040 Nicotiana tabacum HOM05D000925 ORTHO05D001623 1.3e-07 61.2 63 52.4
Sed0024492 Sechium edule HOM05D000925 ORTHO05D001623 1.3e-07 61.2 93 44.1
CSS0026799 Camellia sinensis var. sinensis HOM05D000925 ORTHO05D001623 2.2e-07 60.5 33 87.9
CARHR005410 Cardamine hirsuta HOM05D000925 ORTHO05D001623 2.9e-07 60.1 62 53.2
COL.COLO4_14423 Corchorus olitorius HOM05D000925 ORTHO05D001623 2.9e-07 60.1 108 40.7
HanXRQChr07g0186101 Helianthus annuus HOM05D000925 ORTHO05D001623 2.9e-07 60.1 67 50.7
RcHm_v2.0_Chr0c40g0503391 Rosa chinensis HOM05D000925 ORTHO05D001623 2.9e-07 60.1 93 44.1
RcHm_v2.0_Chr4g0407341 Rosa chinensis HOM05D000925 ORTHO05D001623 2.9e-07 60.1 93 44.1
Atru.chr3.1577 Acer truncatum HOM05D000925 ORTHO05D001623 3.8e-07 59.7 37 78.4
Sabra07G0102800 Salix brachista HOM05D000925 ORTHO05D001623 4.9e-07 59.3 106 34.9
Sed0023768 Sechium edule HOM05D000925 ORTHO05D001623 4.9e-07 59.3 48 62.5
PGSC0003DMG400027006 Solanum tuberosum HOM05D000925 ORTHO05D001623 4.9e-07 59.3 72 52.8
vmacro15643 Vaccinium macrocarpon HOM05D000925 ORTHO05D001623 6.4e-07 58.9 97 44.3
CAN.G65.186 Capsicum annuum HOM05D000925 ORTHO05D001623 8.4e-07 58.5 53 58.5
Lj6A59T26 Lonicera japonica HOM05D000925 ORTHO05D001623 8.4e-07 58.5 41 68.3
Thecc.05G003600 Theobroma cacao HOM05D000925 ORTHO05D001623 2.4e-06 57.0 34 88.2
Actinidia34616 Actinidia chinensis HOM05D000925 ORTHO05D001623 3.2e-06 56.6 32 84.4
Actinidia35966 Actinidia chinensis HOM05D000925 ORTHO05D001623 3.2e-06 56.6 32 84.4
Aa31LG5G5370 Aethionema arabicum HOM05D000925 ORTHO05D001623 5.5e-06 55.8 40 72.5
Sp4g14030 Schrenkiella parvula HOM05D000925 ORTHO05D001623 5.5e-06 55.8 44 68.2
Rhsim02G0076000 Rhododendron simsii HOM05D000925 ORTHO05D001623 7.1e-06 55.5 43 67.4
THA.LOC104803633 Tarenaya hassleriana HOM05D000925 ORTHO05D001623 9.3e-06 55.1 94 42.6


User provided reference genes

Program Settings