Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 4.7e-156 554.7 319 100.0
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 2.8e-148 528.9 319 95.3
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 5.2e-131 471.5 320 88.1
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 8.7e-110 401.0 319 71.2
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 1.9e-88 330.1 316 60.4
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 3.5e-87 325.9 330 60.0
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 1.3e-84 317.4 317 62.5
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.8e-83 313.5 313 57.5
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 1.8e-83 313.5 320 57.8
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 2.0e-82 310.1 320 57.5
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 3.4e-82 309.3 318 56.3
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.7e-81 307.0 313 56.9
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 1.4e-80 303.9 316 56.3
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 5.5e-80 302.0 319 57.1
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 2.7e-79 299.7 316 56.0
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 7.9e-79 298.1 323 56.3
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 1.4e-78 297.4 319 56.4
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 2.3e-78 296.6 324 55.2
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 2.3e-78 296.6 316 55.7
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 1.5e-77 293.9 331 53.2
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 4.3e-77 292.4 319 55.5
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 7.4e-77 291.6 318 56.6
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 9.7e-77 291.2 314 53.2
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 1.3e-76 290.8 314 54.8
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.3e-76 290.8 314 52.9
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 2.2e-76 290.0 320 56.6
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 3.7e-76 289.3 316 55.1
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 4.8e-76 288.9 314 52.5
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 6.3e-76 288.5 319 56.4
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 6.3e-76 288.5 319 56.4
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 6.3e-76 288.5 314 52.5
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 1.1e-75 287.7 320 55.6
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 1.4e-75 287.3 319 54.5
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 2.4e-75 286.6 330 53.9
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 3.1e-75 286.2 324 54.6
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 1.2e-74 284.3 333 51.7
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.5e-74 283.9 330 53.3
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 2.6e-74 283.1 322 55.6
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 3.4e-74 282.7 331 51.7
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 4.5e-74 282.3 320 55.0
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 5.9e-74 282.0 320 53.4
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 5.9e-74 282.0 330 52.1
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 2.9e-73 279.6 320 55.3
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 3.8e-73 279.3 331 52.6
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 5.0e-73 278.9 315 55.2
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 6.5e-73 278.5 334 51.5
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 1.1e-72 277.7 325 53.2
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 1.1e-72 277.7 318 54.7
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 2.5e-72 276.6 322 54.0
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 2.5e-72 276.6 330 51.8
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 2.5e-72 276.6 322 53.4
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 4.2e-72 275.8 330 51.8
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 5.5e-72 275.4 321 53.0
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 7.2e-72 275.0 365 46.6
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 9.4e-72 274.6 320 53.4
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 1.6e-71 273.9 314 51.0
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 1.6e-71 273.9 316 52.8
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 3.6e-71 272.7 318 51.6
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 4.7e-71 272.3 325 52.6
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 6.1e-71 271.9 319 53.0
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 1.4e-70 270.8 314 50.6
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 2.3e-70 270.0 316 53.8
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 3.0e-70 269.6 318 52.5
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 5.1e-70 268.9 240 66.2
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 3.3e-69 266.2 334 51.2
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 5.7e-69 265.4 247 58.7
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 7.4e-69 265.0 322 49.7
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.8e-67 260.4 334 50.3
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 3.1e-67 259.6 316 51.6
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 4.1e-67 259.2 327 50.5
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 2.0e-66 256.9 316 50.9
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 4.5e-66 255.8 316 51.6
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 1.0e-65 254.6 360 45.6
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 1.3e-65 254.2 290 59.0
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 2.9e-65 253.1 313 49.5
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 5.0e-65 252.3 316 54.7
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 8.5e-65 251.5 317 50.8
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 1.9e-64 250.4 317 49.5
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 1.9e-64 250.4 317 49.5
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 4.2e-64 249.2 324 52.5
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 5.5e-64 248.8 317 48.3
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 6.1e-63 245.4 343 50.4
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 1.0e-62 244.6 331 49.5
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 3.0e-62 243.0 324 48.5
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 8.8e-62 241.5 336 50.6
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 7.5e-61 238.4 329 49.5
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 7.5e-61 238.4 321 46.7
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 2.2e-60 236.9 320 50.0
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 4.8e-60 235.7 318 48.1
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 2.4e-59 233.4 274 52.2
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 2.4e-59 233.4 243 56.8
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 4.1e-59 232.6 330 50.9
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 4.1e-59 232.6 264 55.3
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 9.1e-59 231.5 199 61.8
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 1.6e-58 230.7 318 52.5
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 7.7e-58 228.4 315 47.0
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 7.7e-58 228.4 331 46.5
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 1.0e-57 228.0 313 50.5
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 4.2e-56 222.6 279 50.9
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.0e-54 218.0 317 51.1
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 3.0e-54 216.5 263 51.3
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 8.3e-52 208.4 319 43.9
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 2.0e-50 203.8 201 54.7
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 2.0e-50 203.8 201 54.7
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 2.7e-50 203.4 192 57.3
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 2.7e-50 203.4 192 57.3
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 3.5e-50 203.0 321 47.7
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 5.9e-50 202.2 218 53.7
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 7.7e-50 201.8 320 47.5
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.3e-49 201.1 281 45.6
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 3.8e-49 199.5 272 47.1
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 5.0e-49 199.1 216 54.6
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 8.5e-49 198.4 193 58.5
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 9.4e-48 194.9 338 41.4
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 9.4e-48 194.9 317 43.2
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 1.6e-47 194.1 203 53.2
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 8.8e-46 188.3 206 53.4
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 2.6e-45 186.8 174 60.3
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 2.2e-44 183.7 198 53.5
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 2.8e-44 183.3 199 53.8
Haze_00727 Corylus avellana HOM05D002737 ORTHO05D005828 4.5e-42 176.0 156 78.2
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 1.0e-41 174.9 276 43.5
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 1.7e-41 174.1 205 50.2
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 1.1e-40 171.4 210 49.0
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 1.1e-40 171.4 278 42.8
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 9.5e-40 168.3 200 52.5
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 4.4e-37 159.5 340 36.8
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 2.2e-36 157.1 127 66.1
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 2.3e-33 147.1 285 42.5
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 1.5e-32 144.4 318 38.4
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 1.6e-31 141.0 203 39.9
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 2.1e-31 140.6 213 49.8
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 6.8e-30 135.6 168 48.8
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 6.8e-30 135.6 230 43.9
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.5e-29 134.4 221 44.8
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 2.0e-29 134.0 106 67.0
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 1.3e-28 131.3 202 42.6
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.9e-28 130.2 97 71.1
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 9.2e-27 125.2 315 34.6
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.2e-26 124.8 105 60.0
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 1.7e-25 120.9 99 64.6
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 1.1e-22 111.7 317 34.4
Cfa026041 Carpinus fangiana HOM05D002737 ORTHO05D005828 5.8e-21 105.9 103 73.8
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 1.3e-20 104.8 96 58.3
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 1.2e-18 98.2 93 55.9
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 1.7e-17 94.4 153 41.2
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 2.3e-17 94.0 82 63.4
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 3.9e-17 93.2 99 57.6
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 4.7e-15 86.3 71 67.6
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 5.2e-14 82.8 93 51.6
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 1.0e-09 68.6 52 71.2
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.9e-08 64.3 146 36.3
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 7.3e-08 62.4 161 33.5
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 7.3e-08 62.4 155 36.8


User provided reference genes

Program Settings