Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 2.9e-174 615.1 314 100.0
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 2.5e-149 532.3 314 89.2
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 4.7e-124 448.4 314 77.1
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.8e-123 446.4 314 76.1
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 5.0e-118 428.3 316 74.7
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 6.5e-118 427.9 321 73.5
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 2.7e-116 422.5 337 70.3
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 4.7e-116 421.8 315 72.7
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 6.1e-116 421.4 315 72.1
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 6.1e-116 421.4 315 72.1
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 3.0e-115 419.1 298 74.2
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 3.0e-115 419.1 307 74.9
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.2e-114 417.2 318 70.1
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 2.0e-114 416.4 297 74.7
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 3.4e-114 415.6 315 71.1
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 1.3e-113 413.7 316 72.2
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.7e-113 413.3 301 73.1
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 4.8e-113 411.8 292 75.3
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 5.4e-112 408.3 297 74.4
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 2.0e-111 406.4 317 70.3
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 2.0e-111 406.4 302 72.2
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 4.5e-111 405.2 317 68.5
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 5.9e-111 404.8 319 68.0
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.3e-110 403.7 310 70.6
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.3e-110 403.7 270 78.9
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.3e-110 403.7 270 78.9
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 2.2e-110 402.9 305 71.5
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.2e-110 402.9 305 71.5
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.5e-110 401.0 305 71.1
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 1.1e-109 400.6 306 69.6
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 2.5e-109 399.4 306 69.3
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 4.2e-109 398.7 310 69.7
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 5.5e-109 398.3 316 68.0
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.6e-108 396.7 301 71.8
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.6e-108 396.7 305 70.5
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.1e-108 396.4 289 73.0
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.7e-108 396.0 319 67.1
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 3.6e-108 395.6 315 69.2
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 1.0e-107 394.0 305 67.2
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.8e-107 393.3 309 67.3
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 2.3e-107 392.9 314 69.4
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 6.8e-107 391.3 290 72.8
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 6.8e-107 391.3 311 70.1
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 8.8e-107 391.0 319 69.0
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 2.6e-106 389.4 319 68.3
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 4.4e-106 388.7 317 66.9
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 4.4e-106 388.7 319 68.7
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 7.5e-106 387.9 274 73.7
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 9.8e-106 387.5 300 69.0
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 2.2e-105 386.3 313 67.1
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 2.2e-105 386.3 314 66.9
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 2.2e-105 386.3 314 66.9
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 3.7e-105 385.6 310 66.1
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 3.7e-105 385.6 304 67.1
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 4.9e-105 385.2 316 65.8
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 4.9e-105 385.2 319 66.5
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 6.3e-105 384.8 321 64.8
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 6.3e-105 384.8 321 64.8
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 6.3e-105 384.8 292 69.5
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.4e-104 383.6 317 66.6
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 2.4e-104 382.9 292 69.2
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 4.5e-103 378.6 309 66.0
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 2.3e-102 376.3 344 63.7
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 6.6e-102 374.8 311 65.3
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 6.6e-102 374.8 320 64.1
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.9e-101 373.2 289 70.2
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 9.5e-101 370.9 292 67.1
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 9.5e-101 370.9 292 67.1
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 3.6e-100 369.0 315 63.8
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 6.1e-100 368.2 314 64.3
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 1.4e-99 367.1 314 64.0
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 1.4e-99 367.1 291 67.7
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.8e-99 366.7 270 70.4
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.8e-99 364.8 269 70.3
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.5e-98 363.6 288 67.7
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 3.4e-98 362.5 324 62.7
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 9.8e-98 360.9 286 66.8
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.7e-97 360.1 310 64.5
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 2.9e-97 359.4 260 71.5
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 8.3e-97 357.8 316 61.1
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 8.3e-97 357.8 281 65.8
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 8.3e-97 357.8 261 73.9
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.1e-96 357.5 310 62.6
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.1e-96 357.5 317 63.1
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.4e-96 357.1 269 68.0
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 7.0e-96 354.8 266 69.2
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 1.6e-95 353.6 269 69.5
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 4.6e-95 352.1 291 65.3
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 4.6e-95 352.1 267 68.9
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.0e-94 350.9 328 60.4
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 1.3e-94 350.5 309 63.4
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 1.3e-94 350.5 239 74.5
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.3e-94 349.7 286 65.4
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 3.9e-94 349.0 251 71.7
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.9e-93 346.7 314 63.7
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 5.6e-93 345.1 272 67.3
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 7.3e-93 344.7 286 64.7
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 2.1e-92 343.2 312 61.5
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 2.8e-92 342.8 270 67.0
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.4e-91 340.5 328 60.7
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 3.1e-91 339.3 296 63.9
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.2e-90 337.4 328 61.3
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 9.8e-90 334.3 287 60.3
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 4.9e-89 332.0 287 60.3
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 8.3e-89 331.3 290 63.4
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 2.0e-87 326.6 322 58.7
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 4.6e-87 325.5 206 77.2
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 2.3e-86 323.2 318 57.5
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 6.6e-86 321.6 285 62.5
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 8.6e-86 321.2 289 60.9
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.5e-85 320.5 323 59.4
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.1e-83 314.3 312 59.3
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.2e-82 310.8 242 67.8
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 6.4e-81 305.1 223 73.1
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 6.6e-78 295.0 227 65.6
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 5.6e-77 292.0 267 57.7
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.2e-76 290.8 261 61.3
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 2.6e-74 283.1 261 59.8
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 7.6e-74 281.6 177 81.4
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 7.1e-72 275.0 320 51.9
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 3.0e-70 269.6 273 54.2
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 5.6e-69 265.4 265 54.0
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 9.6e-69 264.6 287 51.2
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.8e-68 263.1 197 69.0
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.6e-66 255.0 315 47.6
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.2e-65 253.4 313 50.2
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 3.2e-64 249.6 335 46.3
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 1.9e-61 240.4 303 47.5
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 9.0e-59 231.5 239 53.6
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 3.9e-54 216.1 227 52.4
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 8.7e-54 214.9 158 71.5
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 9.0e-51 204.9 154 68.8
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 3.4e-50 203.0 154 68.8
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.1e-48 198.0 129 75.2
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 4.6e-47 192.6 162 66.0
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.3e-45 186.4 168 60.1
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.1e-43 179.9 218 48.6
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.6e-39 167.5 306 36.9
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.7e-39 166.8 126 71.4
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 5.1e-38 162.5 139 63.3
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 2.4e-35 153.7 246 42.7
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 2.2e-33 147.1 156 56.4
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 6.5e-33 145.6 207 43.0
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 1.9e-29 134.0 145 53.1
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 1.2e-26 124.8 193 45.1
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 1.2e-26 124.8 282 33.7
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 2.0e-26 124.0 82 73.2
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 3.8e-25 119.8 86 69.8
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 5.5e-24 115.9 132 53.0
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 7.2e-24 115.5 72 79.2
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.1e-21 108.2 196 35.7
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.5e-21 107.8 77 67.5
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.3e-20 104.8 100 59.0
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 3.4e-18 96.7 62 75.8
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 3.2e-16 90.1 50 86.0
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 4.1e-11 73.2 122 33.6
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 1.5e-08 64.7 128 32.8
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 7.2e-08 62.4 136 32.4
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 9.4e-08 62.0 137 29.2
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 4.7e-07 59.7 154 27.9
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 4.0e-06 56.6 66 51.5
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 4.0e-06 56.6 66 51.5


User provided reference genes

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