Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 0.0e+00 1146.3 553 100.0
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 5.5e-229 797.7 545 72.8
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 2.9e-206 722.2 532 66.4
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 5.0e-206 721.5 532 65.2
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 1.2e-204 716.8 538 65.2
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 4.4e-202 708.4 530 65.1
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 1.7e-201 706.4 542 64.2
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 1.5e-197 693.3 532 63.2
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.5e-197 692.6 532 63.0
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 3.3e-197 692.2 548 62.2
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 5.2e-195 684.9 530 64.5
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.0e-194 682.9 530 63.0
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 4.4e-194 681.8 558 61.6
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 2.2e-193 679.5 551 63.0
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 6.4e-193 677.9 530 62.8
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 4.6e-191 671.8 544 61.8
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 2.3e-190 669.5 530 62.3
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 3.0e-190 669.1 530 63.2
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 3.9e-190 668.7 530 63.6
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 3.9e-190 668.7 529 63.3
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 5.1e-190 668.3 550 62.2
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 6.6e-190 667.9 531 63.8
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.5e-189 666.8 531 62.7
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 4.3e-189 665.2 529 61.2
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 4.3e-189 665.2 530 62.1
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 9.5e-189 664.1 534 62.4
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 2.1e-188 662.9 530 62.3
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 3.6e-188 662.1 531 62.0
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 1.8e-187 659.8 531 61.2
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 3.1e-187 659.1 530 63.2
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 2.2e-185 652.9 531 60.8
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 3.7e-185 652.1 532 61.5
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 8.3e-185 651.0 531 60.5
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 1.2e-183 647.1 530 60.9
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 1.6e-183 646.7 530 60.6
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 3.0e-182 642.5 533 60.4
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 5.1e-182 641.7 530 59.8
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 1.1e-181 640.6 532 60.9
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 1.9e-181 639.8 553 57.5
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 2.5e-181 639.4 531 60.5
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 1.1e-179 634.0 559 57.4
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 2.9e-177 625.9 533 58.2
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 2.9e-177 625.9 546 57.5
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 5.4e-176 621.7 527 58.6
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 7.1e-176 621.3 561 57.2
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 7.1e-176 621.3 561 57.2
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 7.1e-176 621.3 560 55.9
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 1.6e-175 620.2 533 58.7
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 6.0e-175 618.2 603 54.4
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.0e-174 617.5 490 63.3
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 2.3e-174 616.3 556 57.4
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 8.7e-174 614.4 532 58.1
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 2.5e-173 612.8 557 57.1
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 4.3e-173 612.1 535 58.7
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.3e-172 610.5 534 58.1
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 2.8e-172 609.4 533 57.6
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 2.4e-171 606.3 533 56.5
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 3.1e-171 605.9 528 57.2
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 1.2e-170 604.0 534 57.7
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 5.8e-170 601.7 561 56.3
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 7.6e-170 601.3 523 57.9
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 6.4e-169 598.2 530 57.4
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.4e-168 597.0 561 56.1
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 3.2e-168 595.9 531 56.1
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 5.4e-168 595.1 530 57.2
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 3.5e-167 592.4 527 57.1
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 3.5e-167 592.4 554 55.4
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 4.6e-167 592.0 527 56.9
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.8e-163 580.1 531 55.4
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 2.6e-162 576.2 528 55.9
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.4e-162 575.9 530 54.5
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 3.8e-161 572.4 545 56.3
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.9e-160 570.1 527 55.4
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 4.2e-160 568.9 527 55.4
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 7.1e-160 568.2 527 55.2
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 2.1e-159 566.6 527 55.2
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 2.1e-159 566.6 527 55.2
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 6.0e-159 565.1 526 54.6
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 1.5e-157 560.5 526 54.4
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.3e-157 559.3 646 47.2
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 9.6e-157 557.8 544 54.0
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 1.6e-156 557.0 530 54.2
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 5.8e-154 548.5 525 53.0
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 1.3e-153 547.4 531 54.6
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 1.7e-153 547.0 527 53.7
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 4.2e-152 542.3 528 53.0
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.9e-144 516.9 530 48.3
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 7.1e-144 515.0 557 47.2
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 9.3e-144 514.6 528 52.1
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 1.0e-142 511.1 530 49.8
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.8e-142 510.4 498 52.6
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 3.7e-140 502.7 536 47.2
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 4.3e-133 479.2 369 67.2
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 1.3e-132 477.6 390 61.0
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 2.4e-131 473.4 395 61.5
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.7e-116 424.1 424 52.6
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 4.0e-110 402.9 364 55.8
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 3.7e-108 396.4 418 51.7
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 1.5e-96 357.8 549 35.5
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.9e-88 330.9 345 51.6
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 4.3e-88 329.7 345 51.6
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 6.8e-86 322.4 545 36.7
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 6.8e-86 322.4 536 35.3
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 2.4e-83 313.9 226 68.6
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 5.4e-83 312.8 334 50.6
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 2.3e-81 307.4 530 35.7
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 3.9e-73 280.0 286 48.6
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 6.6e-73 279.3 245 59.2
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.2e-69 268.5 347 40.1
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 1.6e-66 258.1 215 60.9
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 6.9e-54 216.1 399 34.8
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 4.8e-39 166.8 85 87.1
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 1.5e-37 161.8 104 76.0
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 3.4e-37 160.6 340 33.8
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 1.3e-33 148.7 82 81.7
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 3.4e-29 134.0 107 57.9
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.3e-20 105.5 69 71.0
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.6e-18 98.6 114 46.5
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.1e-16 92.4 51 84.3
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.5e-16 92.0 99 49.5
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.0e-16 91.7 51 82.4
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.7e-15 88.6 51 84.3
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.7e-15 87.4 51 78.4
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.7e-15 87.4 51 78.4
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.7e-15 87.4 145 33.8
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 5.9e-13 80.1 39 89.7
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 5.0e-12 77.0 72 50.0
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 6.5e-12 76.6 73 46.6
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.7e-07 60.8 51 60.8
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 1.1e-06 59.3 100 42.0


User provided reference genes

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