Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00608 Corylus avellana HOM05D003510 ORTHO05D004144 1.8e-63 245.7 123 100.0
Haze_00607 Corylus avellana HOM05D003510 ORTHO05D004144 4.6e-51 204.5 115 93.0
QL01p040948 Quercus lobata HOM05D003510 ORTHO05D004144 2.1e-27 125.9 112 67.0
TWI75G1742 Tripterygium wilfordii HOM05D003510 ORTHO05D004144 3.0e-26 122.1 94 62.8
CiPaw.05G239200 Carya illinoinensis HOM05D003510 ORTHO05D004144 5.7e-25 117.9 103 64.1
Duzib248G1132 Durio zibethinus HOM05D003510 ORTHO05D004144 2.4e-23 112.5 92 65.2
Prupe.1G313100 Prunus persica HOM05D003510 ORTHO05D004144 1.3e-21 106.7 103 60.2
Eucgr.B03007 Eucalyptus grandis HOM05D003510 ORTHO05D004144 2.9e-21 105.5 103 60.2
MD16G1041000 Malus domestica HOM05D003510 ORTHO05D004144 2.9e-21 105.5 101 63.4
GSVIVG01011878001 Vitis vinifera HOM05D003510 ORTHO05D004144 1.1e-20 103.6 91 64.8
Hma1.2p1_0061F.1_g033710 Hydrangea macrophylla HOM05D003510 ORTHO05D004144 2.5e-20 102.4 98 56.1
Manes.14G104000 Manihot esculenta HOM05D003510 ORTHO05D004144 4.2e-20 101.7 104 57.7
Gohir.A04G098000 Gossypium hirsutum HOM05D003510 ORTHO05D004144 9.3e-20 100.5 93 58.1
GSVIVG01011876001 Vitis vinifera HOM05D003510 ORTHO05D004144 9.3e-20 100.5 91 63.7
Gohir.D04G137800 Gossypium hirsutum HOM05D003510 ORTHO05D004144 1.2e-19 100.1 93 58.1
Gorai.012G122200 Gossypium raimondii HOM05D003510 ORTHO05D004144 1.2e-19 100.1 93 58.1
Ciclev10016740m.g Citrus clementina HOM05D003510 ORTHO05D004144 1.6e-19 99.8 93 61.3
Dinv21067 Davidia involucrata HOM05D003510 ORTHO05D004144 2.3e-18 95.9 59 81.4
Thecc.02G226300 Theobroma cacao HOM05D003510 ORTHO05D004144 3.9e-18 95.1 92 58.7
Sabra10G0093200 Salix brachista HOM05D003510 ORTHO05D004144 8.8e-18 94.0 102 52.9
FAN17G2584 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.1e-17 93.6 96 55.2
FvH4_4g27130 Fragaria vesca HOM05D003510 ORTHO05D004144 1.5e-17 93.2 103 52.4
FAN12G2466 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.5e-17 93.2 103 52.4
Cc11_g09950 Coffea canephora HOM05D003510 ORTHO05D004144 1.9e-17 92.8 89 56.2
RcHm_v2.0_Chr4g0434941 Rosa chinensis HOM05D003510 ORTHO05D004144 3.3e-17 92.0 103 52.4
RcHm_v2.0_Chr4g0434951 Rosa chinensis HOM05D003510 ORTHO05D004144 3.3e-17 92.0 103 53.4
FAN22G0292 Fragaria x ananassa HOM05D003510 ORTHO05D004144 4.3e-17 91.7 103 51.5
Lalb_Chr04g0254661 Lupinus albus HOM05D003510 ORTHO05D004144 7.4e-17 90.9 77 62.3
CSS0018626 Camellia sinensis var. sinensis HOM05D003510 ORTHO05D004144 1.3e-16 90.1 105 58.1
Gohir.D04G137825 Gossypium hirsutum HOM05D003510 ORTHO05D004144 1.7e-16 89.7 89 56.2
CsaV3_5G034440 Cucumis sativus L. HOM05D003510 ORTHO05D004144 3.7e-16 88.6 72 62.5
Atru.chr11.132 Acer truncatum HOM05D003510 ORTHO05D004144 4.8e-16 88.2 104 52.9
Potri.010G123102 Populus trichocarpa HOM05D003510 ORTHO05D004144 6.3e-16 87.8 118 47.5
Carub.0002s1476 Capsella rubella HOM05D003510 ORTHO05D004144 8.2e-16 87.4 59 69.5
vmacro10567 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 1.1e-15 87.0 96 52.1
Lj3A1013T42 Lonicera japonica HOM05D003510 ORTHO05D004144 1.4e-15 86.7 96 53.1
Oeu059502.1 Olea europaea HOM05D003510 ORTHO05D004144 1.4e-15 86.7 106 52.8
Thhalv10019154m.g Eutrema salsugineum HOM05D003510 ORTHO05D004144 2.4e-15 85.9 96 54.2
MSTRG.13540 Avicennia marina HOM05D003510 ORTHO05D004144 3.1e-15 85.5 67 65.7
BcaC08g46259 Brassica carinata HOM05D003510 ORTHO05D004144 3.1e-15 85.5 69 62.3
C06p41720 Brassica napus HOM05D003510 ORTHO05D004144 3.1e-15 85.5 69 62.3
Lj2g0023320 Lotus japonicus HOM05D003510 ORTHO05D004144 3.1e-15 85.5 105 49.5
THA.LOC104808154 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 3.1e-15 85.5 93 53.8
PGR102G3338 Punica granatum HOM05D003510 ORTHO05D004144 5.3e-15 84.7 88 59.1
Sp1g30110 Schrenkiella parvula HOM05D003510 ORTHO05D004144 6.9e-15 84.3 64 60.9
CANSAT01G1441 Cannabis sativa HOM05D003510 ORTHO05D004144 9.1e-15 84.0 104 51.0
TAR371G0378 Trochodendron aralioides HOM05D003510 ORTHO05D004144 9.1e-15 84.0 88 56.8
MELO3C012260.2 Cucumis melo HOM05D003510 ORTHO05D004144 1.2e-14 83.6 72 58.3
Phvul.003G030100 Phaseolus vulgaris HOM05D003510 ORTHO05D004144 1.5e-14 83.2 59 67.8
Sed0022764 Sechium edule HOM05D003510 ORTHO05D004144 1.5e-14 83.2 70 65.7
Hund25056 Selenicereus undatus HOM05D003510 ORTHO05D004144 1.5e-14 83.2 95 54.7
Glyma.01G080400 Glycine max HOM05D003510 ORTHO05D004144 2.0e-14 82.8 59 67.8
Medtr5g056390 Medicago truncatula HOM05D003510 ORTHO05D004144 2.0e-14 82.8 69 59.4
VMungo1215G1668 Vigna mungo HOM05D003510 ORTHO05D004144 2.0e-14 82.8 89 57.3
Aa31sc376G40 Aethionema arabicum HOM05D003510 ORTHO05D004144 2.6e-14 82.4 82 57.3
FAN12G3824 Fragaria x ananassa HOM05D003510 ORTHO05D004144 2.6e-14 82.4 77 59.7
AL2G27110 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 4.5e-14 81.6 63 66.7
arahy.Tifrunner.gnm1.ann1.VLLQ8N Arachis hypogaea HOM05D003510 ORTHO05D004144 4.5e-14 81.6 72 58.3
Gorai.012G122400 Gossypium raimondii HOM05D003510 ORTHO05D004144 4.5e-14 81.6 93 49.5
ATR1125G078 Amborella trichopoda HOM05D003510 ORTHO05D004144 5.9e-14 81.3 67 64.2
AT1G68260 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 7.7e-14 80.9 63 65.1
arahy.Tifrunner.gnm1.ann1.LKJ3D4 Arachis hypogaea HOM05D003510 ORTHO05D004144 7.7e-14 80.9 63 61.9
BolC6t39254H Brassica oleracea HOM05D001294 ORTHO05D001178 7.7e-14 80.9 70 61.4
CARHR060960 Cardamine hirsuta HOM05D003510 ORTHO05D004144 7.7e-14 80.9 71 62.0
Sp5g23330 Schrenkiella parvula HOM05D003510 ORTHO05D004144 7.7e-14 80.9 89 53.9
Rhsim09G0106600 Rhododendron simsii HOM05D003510 ORTHO05D004144 1.0e-13 80.5 102 49.0
COL.COLO4_04883 Corchorus olitorius HOM05D003510 ORTHO05D004144 1.7e-13 79.7 55 69.1
Psat2g082000 Pisum sativum HOM05D003510 ORTHO05D004144 2.2e-13 79.3 76 52.6
Ah.02g127620 Amaranthus hybridus HOM05D003510 ORTHO05D004144 2.9e-13 79.0 44 81.8
BraA07t31088Z Brassica rapa HOM05D003510 ORTHO05D004144 5.0e-13 78.2 52 69.2
ClCG05G022600 Citrullus lanatus HOM05D003510 ORTHO05D004144 5.0e-13 78.2 72 58.3
FvH4_4g27160 Fragaria vesca HOM05D003510 ORTHO05D004144 6.5e-13 77.8 63 63.5
Migut.E00355 Erythranthe guttata HOM05D003510 ORTHO05D004144 8.5e-13 77.4 62 66.1
Solyc04g007260.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 8.5e-13 77.4 97 49.5
AL1G49960 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 1.1e-12 77.0 65 60.0
FAN12G1645 Fragaria x ananassa HOM05D003510 ORTHO05D004144 1.1e-12 77.0 77 57.1
SGA_v2.0_scaffold14G06881 Striga asiatica HOM05D003510 ORTHO05D004144 1.1e-12 77.0 106 48.1
Carub.0001s3288 Capsella rubella HOM05D003510 ORTHO05D004144 1.4e-12 76.6 66 60.6
CARHR220110 Cardamine hirsuta HOM05D003510 ORTHO05D004144 1.4e-12 76.6 74 54.1
Migut.H02048 Erythranthe guttata HOM05D003510 ORTHO05D004144 1.4e-12 76.6 50 66.0
CARHR286260 Cardamine hirsuta HOM05D003510 ORTHO05D004144 1.9e-12 76.3 71 57.7
Lalb_Chr04g0254671 Lupinus albus HOM05D003510 ORTHO05D004144 1.9e-12 76.3 77 55.8
Carub.0001s3294 Capsella rubella HOM05D003510 ORTHO05D004144 3.2e-12 75.5 71 57.7
FAN12G0948 Fragaria x ananassa HOM05D003510 ORTHO05D004144 3.2e-12 75.5 63 61.9
Sc11g0003500 Simmondsia chinensis HOM05D003510 ORTHO05D004144 4.2e-12 75.1 107 43.9
vmacro10568 Vaccinium macrocarpon HOM05D003510 ORTHO05D004144 4.2e-12 75.1 110 46.4
Aqoxy3G03956 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 5.5e-12 74.7 66 57.6
PSO063G2460 Papaver somniferum HOM05D003510 ORTHO05D004144 5.5e-12 74.7 53 64.2
AT1G35250 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 9.4e-12 73.9 89 48.3
Sopen04g002320 Solanum pennellii HOM05D003510 ORTHO05D004144 9.4e-12 73.9 97 48.5
DCAR_023651 Daucus carota HOM05D003510 ORTHO05D004144 1.2e-11 73.6 120 42.5
THA.LOC104821911 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 1.2e-11 73.6 89 52.8
EL10Ac6g14376 Beta vulgaris HOM05D003510 ORTHO05D004144 1.6e-11 73.2 98 49.0
PGSC0003DMG400005981 Solanum tuberosum HOM05D003510 ORTHO05D004144 2.1e-11 72.8 99 48.5
AT1G35290 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 2.7e-11 72.4 62 53.2
Lsat_1_v5_gn_4_15820 Lactuca sativa HOM05D003510 ORTHO05D004144 2.7e-11 72.4 94 46.8
Ca_10364_v3 Cicer arietinum L. HOM05D003510 ORTHO05D004144 3.6e-11 72.0 60 58.3
Nitab4.5_0000057g0210 Nicotiana tabacum HOM05D003510 ORTHO05D004144 4.7e-11 71.6 75 53.3
HPP92_015110 Vanilla planifolia HOM05D003510 ORTHO05D004144 6.1e-11 71.2 77 54.5
HPP92_015116 Vanilla planifolia HOM05D003510 ORTHO05D004144 6.1e-11 71.2 77 54.5
CAN.G1052.1 Capsicum annuum HOM05D003510 ORTHO05D004144 1.0e-10 70.5 68 58.8
Peaxi162Scf00564g00029 Petunia axillaris HOM05D003510 ORTHO05D004144 1.0e-10 70.5 39 79.5
unitig_27.g25253 Utricularia gibba HOM05D003510 ORTHO05D004144 1.0e-10 70.5 40 82.5
HanXRQChr16g0529461 Helianthus annuus HOM05D003510 ORTHO05D004144 1.4e-10 70.1 72 55.6
TPR.G38336 Trifolium pratense HOM05D003510 ORTHO05D004144 1.4e-10 70.1 112 36.6
Carub.0001s3293 Capsella rubella HOM05D003510 ORTHO05D004144 1.8e-10 69.7 80 50.0
Nitab4.5_0007398g0020 Nicotiana tabacum HOM05D003510 ORTHO05D004144 1.8e-10 69.7 81 49.4
AL1G50030 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 2.3e-10 69.3 47 68.1
BcaB02g07984 Brassica carinata HOM05D003510 ORTHO05D004144 2.3e-10 69.3 71 52.1
Actinidia02892 Actinidia chinensis HOM05D003510 ORTHO05D004144 3.9e-10 68.6 36 88.9
AT1G68280 Arabidopsis thaliana HOM05D003510 ORTHO05D004144 3.9e-10 68.6 67 58.2
Medtr5g056230 Medicago truncatula HOM05D003510 ORTHO05D004144 6.7e-10 67.8 70 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2496 Anthoceros agrestis HOM05D003510 ORTHO05D004144 8.8e-10 67.4 43 72.1
PGSC0003DMG401015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.1e-09 67.0 81 53.1
PGSC0003DMG402015879 Solanum tuberosum HOM05D003510 ORTHO05D004144 1.5e-09 66.6 78 53.8
AUR62022283 Chenopodium quinoa HOM05D003510 ORTHO05D004144 4.4e-09 65.1 47 63.8
Os04g0553300 Oryza sativa ssp. japonica HOM05D003510 ORTHO05D004144 4.4e-09 65.1 58 58.6
AL1G49980 Arabidopsis lyrata HOM05D003510 ORTHO05D004144 7.4e-09 64.3 63 54.0
AUR62023875 Chenopodium quinoa HOM05D003510 ORTHO05D004144 7.4e-09 64.3 44 70.5
AUR62034133 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.3e-08 63.5 32 87.5
AUR62034134 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.3e-08 63.5 55 61.8
AUR62044553 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.3e-08 63.5 55 61.8
AUR62044554 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.3e-08 63.5 55 61.8
AagrBONN_evm.TU.Sc2ySwM_344.2495 Anthoceros agrestis HOM05D003510 ORTHO05D004144 2.2e-08 62.8 59 57.6
Cpa.g.sc65.43 Carica papaya HOM05D003510 ORTHO05D004144 2.8e-08 62.4 107 47.7
Lsat_1_v5_gn_5_163161 Lactuca sativa HOM05D003510 ORTHO05D004144 2.8e-08 62.4 101 43.6
CARHR259050 Cardamine hirsuta HOM05D003510 ORTHO05D004144 3.7e-08 62.0 72 52.8
SalBow8G4707 Salvia bowleyana HOM05D003510 ORTHO05D004144 3.7e-08 62.0 54 57.4
CANSAT35G1684 Cannabis sativa HOM05D003510 ORTHO05D004144 4.8e-08 61.6 34 76.5
DCAR_007249 Daucus carota HOM05D003510 ORTHO05D004144 4.8e-08 61.6 121 36.4
Solyc04g007200.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 6.3e-08 61.2 74 47.3
Sopen04g002260 Solanum pennellii HOM05D003510 ORTHO05D004144 6.3e-08 61.2 75 50.7
TPR.G27953 Trifolium pratense HOM05D003510 ORTHO05D004144 6.3e-08 61.2 34 79.4
Ah.01g017060 Amaranthus hybridus HOM05D003510 ORTHO05D004144 1.8e-07 59.7 65 52.3
BcaB03g15105 Brassica carinata HOM05D003510 ORTHO05D004144 2.4e-07 59.3 32 81.2
THA.LOC104815461 Tarenaya hassleriana HOM05D003510 ORTHO05D004144 3.1e-07 58.9 78 44.9
Zm00001eb074540 Zea mays HOM05D003510 ORTHO05D004144 3.1e-07 58.9 31 80.6
ECA234G3856 Erigeron canadensis HOM05D003510 ORTHO05D000001 4.1e-07 58.5 36 69.4
Solyc04g007190.4 Solanum lycopersicum HOM05D003510 ORTHO05D004144 4.1e-07 58.5 94 44.7
SEGI_30670 Sequoiadendron giganteum HOM05D003510 ORTHO05D004144 5.3e-07 58.2 32 81.2
Migut.M00675 Erythranthe guttata HOM05D003510 ORTHO05D004144 7.0e-07 57.8 55 43.6
Aqoxy1G03141 Aquilegia oxysepala HOM05D003510 ORTHO05D004144 9.1e-07 57.4 28 89.3
MELO3C012259.2 Cucumis melo HOM05D003510 ORTHO05D004144 9.1e-07 57.4 42 61.9
HanXRQChr03g0078631 Helianthus annuus HOM05D003510 ORTHO05D004144 1.2e-06 57.0 32 75.0
HanXRQChr10g0288901 Helianthus annuus HOM05D003510 ORTHO05D004144 1.2e-06 57.0 32 75.0
HanXRQChr10g0296841 Helianthus annuus HOM05D003510 ORTHO05D004144 1.2e-06 57.0 32 75.0
AUR62002850 Chenopodium quinoa HOM05D003510 ORTHO05D004144 1.5e-06 56.6 72 45.8
RcHm_v2.0_Chr6g0286301 Rosa chinensis HOM05D003510 ORTHO05D004144 1.5e-06 56.6 32 81.2
RcHm_v2.0_Chr6g0286321 Rosa chinensis HOM05D003510 ORTHO05D004144 1.5e-06 56.6 32 81.2
Cpa.g.sc65.42 Carica papaya HOM05D003510 ORTHO05D004144 2.0e-06 56.2 31 80.6
CANSAT35G0765 Cannabis sativa HOM05D003510 ORTHO05D004144 2.6e-06 55.8 31 74.2
Migut.M00674 Erythranthe guttata HOM05D003510 ORTHO05D004144 2.6e-06 55.8 41 53.7
Psat0s3549g0120 Pisum sativum HOM05D003510 ORTHO05D004144 2.6e-06 55.8 56 50.0
SGA_v2.0_scaffold73G24371 Striga asiatica HOM05D003510 ORTHO05D004144 2.6e-06 55.8 45 57.8
RcHm_v2.0_Chr6g0286291 Rosa chinensis HOM05D003510 ORTHO05D004144 4.5e-06 55.1 32 78.1
CANSAT35G1707 Cannabis sativa HOM05D003510 ORTHO05D004144 5.9e-06 54.7 28 78.6
RcHm_v2.0_Chr6g0286191 Rosa chinensis HOM05D003510 ORTHO05D004144 5.9e-06 54.7 31 77.4
RcHm_v2.0_Chr6g0286261 Rosa chinensis HOM05D003510 ORTHO05D004144 5.9e-06 54.7 31 77.4
ECA234G2589 Erigeron canadensis HOM05D003510 ORTHO05D004144 7.7e-06 54.3 32 75.0
SMO119G0319 Selaginella moellendorffii HOM05D003510 ORTHO05D004144 7.7e-06 54.3 26 88.5
PGSC0003DMG400007750 Solanum tuberosum HOM05D003510 ORTHO05D004144 7.7e-06 54.3 29 82.8


User provided reference genes

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