Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00598 Corylus avellana HOM05D006369 ORTHO05D007764 6.3e-109 397.5 211 100.0
Cfa015892 Carpinus fangiana HOM05D006369 ORTHO05D007764 7.6e-86 320.9 208 86.1
CiPaw.05G237500 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.9e-73 279.6 183 83.1
CiPaw.06G019700 Carya illinoinensis HOM05D006369 ORTHO05D007764 1.9e-65 253.1 200 72.0
Ciclev10021854m.g Citrus clementina HOM05D006369 ORTHO05D007764 1.7e-61 240.0 183 74.3
RcHm_v2.0_Chr1g0383921 Rosa chinensis HOM05D006369 ORTHO05D007764 4.2e-60 235.3 183 73.8
Dinv29169 Davidia involucrata HOM05D006369 ORTHO05D007764 6.0e-59 231.5 187 69.0
Atru.chr7.1119 Acer truncatum HOM05D006369 ORTHO05D007764 1.8e-58 229.9 200 66.5
FvH4_7g33790 Fragaria vesca HOM05D006369 ORTHO05D007764 8.7e-58 227.6 183 72.7
FAN01G2653 Fragaria x ananassa HOM05D006369 ORTHO05D007764 8.7e-58 227.6 183 72.7
Thecc.03G000800 Theobroma cacao HOM05D006369 ORTHO05D007764 3.3e-57 225.7 183 71.6
Prupe.2G324400 Prunus persica HOM05D006369 ORTHO05D007764 2.8e-56 222.6 202 63.4
FAN10G1961 Fragaria x ananassa HOM05D006369 ORTHO05D007764 3.7e-56 222.2 183 71.0
FAN10G2535 Fragaria x ananassa HOM05D006369 ORTHO05D007764 3.7e-56 222.2 183 71.0
FAN03G1142 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.8e-56 221.9 183 71.0
FAN03G2967 Fragaria x ananassa HOM05D006369 ORTHO05D007764 4.8e-56 221.9 183 71.0
Manes.08G163800 Manihot esculenta HOM05D006369 ORTHO05D007764 4.8e-56 221.9 183 70.5
MD07G1306400 Malus domestica HOM05D006369 ORTHO05D007764 6.9e-55 218.0 183 68.3
MD01G1234200 Malus domestica HOM05D006369 ORTHO05D007764 2.0e-54 216.5 211 61.6
Actinidia00694 Actinidia chinensis HOM05D006369 ORTHO05D007764 1.3e-53 213.8 179 68.2
Duzib211G0044 Durio zibethinus HOM05D006369 ORTHO05D007764 1.7e-53 213.4 183 68.9
Gorai.001G204600 Gossypium raimondii HOM05D006369 ORTHO05D007764 3.8e-53 212.2 187 69.0
Gohir.A07G176900 Gossypium hirsutum HOM05D006369 ORTHO05D007764 1.1e-52 210.7 187 67.9
Lalb_Chr19g0139881 Lupinus albus HOM05D006369 ORTHO05D007764 1.9e-52 209.9 182 64.3
Cc02_g00390 Coffea canephora HOM05D006369 ORTHO05D007764 4.2e-52 208.8 186 64.0
Gohir.D07G184401 Gossypium hirsutum HOM05D006369 ORTHO05D007764 5.5e-52 208.4 187 67.9
MELO3C024871.2 Cucumis melo HOM05D006369 ORTHO05D007764 2.7e-51 206.1 183 65.6
Potri.019G052400 Populus trichocarpa HOM05D006369 ORTHO05D007764 1.0e-50 204.1 183 65.6
CsaV3_4G008720 Cucumis sativus L. HOM05D006369 ORTHO05D007764 2.3e-50 203.0 183 63.9
GSVIVG01024423001 Vitis vinifera HOM05D006369 ORTHO05D007764 2.3e-50 203.0 149 72.5
TAR365G0740 Trochodendron aralioides HOM05D006369 ORTHO05D007764 3.0e-50 202.6 186 62.4
CANSAT21G0373 Cannabis sativa HOM05D006369 ORTHO05D007764 3.9e-50 202.2 185 67.6
ClCG10G009050 Citrullus lanatus HOM05D006369 ORTHO05D007764 1.9e-49 199.9 183 62.8
Nn3g21321 Nelumbo nucifera HOM05D006369 ORTHO05D007764 1.9e-49 199.9 216 56.5
Hund18049 Selenicereus undatus HOM05D006369 ORTHO05D007764 2.5e-49 199.5 191 60.7
Nitab4.5_0000001g0150 Nicotiana tabacum HOM05D006369 ORTHO05D007764 7.4e-49 198.0 183 63.9
Nitab4.5_0000820g0010 Nicotiana tabacum HOM05D006369 ORTHO05D007764 1.3e-48 197.2 182 64.3
CSS0035893 Camellia sinensis var. sinensis HOM05D006369 ORTHO05D007764 2.8e-48 196.1 199 59.8
Phvul.011G021200 Phaseolus vulgaris HOM05D006369 ORTHO05D007764 6.2e-48 194.9 182 64.3
Lj1A1033G61 Lonicera japonica HOM05D006369 ORTHO05D007764 1.4e-47 193.7 185 62.7
Sed0025457 Sechium edule HOM05D006369 ORTHO05D007764 1.4e-47 193.7 184 63.0
VMungo1127G0993 Vigna mungo HOM05D006369 ORTHO05D007764 2.4e-47 193.0 186 62.9
BcaNung00427 Brassica carinata HOM05D006369 ORTHO05D007764 4.1e-47 192.2 194 61.3
Oeu005324.1 Olea europaea HOM05D006369 ORTHO05D007764 6.9e-47 191.4 171 64.9
Glyma.11G092500 Glycine max HOM05D006369 ORTHO05D007764 1.2e-46 190.7 201 58.2
EL10Ac7g17391 Beta vulgaris HOM05D006369 ORTHO05D007764 1.5e-46 190.3 189 59.8
Glyma.12G018800 Glycine max HOM05D006369 ORTHO05D007764 1.5e-46 190.3 184 63.0
MSTRG.8579 Avicennia marina HOM05D006369 ORTHO05D007764 4.5e-46 188.7 178 61.8
Migut.F00102 Erythranthe guttata HOM05D006369 ORTHO05D007764 1.3e-45 187.2 183 61.7
THA.LOC104820876 Tarenaya hassleriana HOM05D006369 ORTHO05D007764 1.3e-45 187.2 183 62.3
Ca_04928_v3 Cicer arietinum L. HOM05D006369 ORTHO05D007764 5.0e-45 185.3 182 59.9
arahy.Tifrunner.gnm1.ann1.WFP97B Arachis hypogaea HOM05D006369 ORTHO05D007764 1.9e-44 183.3 181 59.7
Lsat_1_v5_gn_3_37940 Lactuca sativa HOM05D006369 ORTHO05D007764 4.2e-44 182.2 197 54.8
Psat7g171520 Pisum sativum HOM05D006369 ORTHO05D007764 9.3e-44 181.0 182 57.7
SGA_v2.0_scaffold18G08505 Striga asiatica HOM05D006369 ORTHO05D007764 9.3e-44 181.0 174 59.2
CAN.G317.12 Capsicum annuum HOM05D006369 ORTHO05D007764 1.6e-43 180.3 198 57.1
AL6G28090 Arabidopsis lyrata HOM05D006369 ORTHO05D007764 2.1e-43 179.9 167 62.9
vmacro02505 Vaccinium macrocarpon HOM05D006369 ORTHO05D007764 2.1e-43 179.9 219 54.3
Thhalv10014449m.g Eutrema salsugineum HOM05D006369 ORTHO05D007764 2.7e-43 179.5 194 59.3
BcaC03g18532 Brassica carinata HOM05D006369 ORTHO05D007764 3.5e-43 179.1 193 58.0
C02p08760 Brassica napus HOM05D006369 ORTHO05D007764 3.5e-43 179.1 193 58.0
BolC2t06790H Brassica oleracea HOM05D006369 ORTHO05D007764 3.5e-43 179.1 193 58.0
BcaB01g04960 Brassica carinata HOM05D006369 ORTHO05D007764 4.6e-43 178.7 185 61.6
Ah.08g212670 Amaranthus hybridus HOM05D006369 ORTHO05D007764 6.1e-43 178.3 178 60.7
A02p03940 Brassica napus HOM05D006369 ORTHO05D007764 6.1e-43 178.3 183 60.7
Aqoxy2G03109 Aquilegia oxysepala HOM05D006369 ORTHO05D007764 7.9e-43 177.9 203 52.2
CARHR196110 Cardamine hirsuta HOM05D006369 ORTHO05D007764 7.9e-43 177.9 183 60.1
Sp6g27090 Schrenkiella parvula HOM05D006369 ORTHO05D007764 1.3e-42 177.2 167 62.3
SalBow4G3280 Salvia bowleyana HOM05D006369 ORTHO05D007764 3.0e-42 176.0 179 55.9
BraA02t05358Z Brassica rapa HOM05D006369 ORTHO05D007764 5.1e-42 175.3 184 60.9
Lj3g0017971 Lotus japonicus HOM05D006369 ORTHO05D007764 8.7e-42 174.5 206 54.4
Solyc03g062680.3 Solanum lycopersicum HOM05D006369 ORTHO05D007764 8.7e-42 174.5 190 58.9
arahy.Tifrunner.gnm1.ann1.F9R2PF Arachis hypogaea HOM05D006369 ORTHO05D007764 1.1e-41 174.1 196 55.1
Eucgr.A02962 Eucalyptus grandis HOM05D006369 ORTHO05D007764 1.1e-41 174.1 174 59.8
Sopen03g015000 Solanum pennellii HOM05D006369 ORTHO05D007764 1.9e-41 173.3 190 59.5
Aa31LG11G12610 Aethionema arabicum HOM05D006369 ORTHO05D007764 2.5e-41 172.9 191 55.5
TPR.G39567 Trifolium pratense HOM05D006369 ORTHO05D007764 2.5e-41 172.9 190 56.8
HanXRQChr17g0541681 Helianthus annuus HOM05D006369 ORTHO05D007764 3.3e-41 172.6 195 55.4
PGR042G2784 Punica granatum HOM05D006369 ORTHO05D007764 4.3e-41 172.2 175 60.6
Medtr4g077610 Medicago truncatula HOM05D006369 ORTHO05D007764 9.7e-41 171.0 153 62.7
Carub.0006s1525 Capsella rubella HOM05D006369 ORTHO05D007764 2.2e-40 169.9 167 61.7
AT5G17070 Arabidopsis thaliana HOM05D006369 ORTHO05D007764 4.8e-40 168.7 167 58.1
Peaxi162Scf00076g00928 Petunia axillaris HOM05D006369 ORTHO05D007764 5.3e-39 165.2 273 44.0
MBI06_g08525_MAGBIO Magnolia biondii HOM05D006369 ORTHO05D007764 6.9e-39 164.9 163 60.7
Sc05g0004440 Simmondsia chinensis HOM05D006369 ORTHO05D007764 1.0e-37 161.0 146 63.7
Psat1g047280 Pisum sativum HOM05D006369 ORTHO05D007764 1.2e-35 154.1 124 66.1
PSO210G6912 Papaver somniferum HOM05D006369 ORTHO05D007764 1.6e-35 153.7 199 51.3
PSO170G0520 Papaver somniferum HOM05D006369 ORTHO05D007764 2.1e-35 153.3 199 51.3
Psat1g047200 Pisum sativum HOM05D006369 ORTHO05D007764 3.6e-35 152.5 124 66.1
Psat1g047240 Pisum sativum HOM05D006369 ORTHO05D007764 4.6e-35 152.1 124 65.3
ECA246G2850 Erigeron canadensis HOM05D006369 ORTHO05D007764 3.9e-34 149.1 191 49.7
Rhsim13G0016700 Rhododendron simsii HOM05D006369 ORTHO05D007764 2.2e-32 143.3 257 41.6
DCAR_020401 Daucus carota HOM05D006369 ORTHO05D007764 3.7e-32 142.5 192 52.1
COL.COLO4_13442 Corchorus olitorius HOM05D006369 ORTHO05D007764 5.3e-31 138.7 181 51.4
ATR0213G006 Amborella trichopoda HOM05D006369 ORTHO05D007764 5.9e-30 135.2 189 48.1
HPP92_026820 Vanilla planifolia HOM05D006369 ORTHO05D007764 4.2e-28 129.0 157 53.5
Os06g0300700 Oryza sativa ssp. japonica HOM05D006369 ORTHO05D007764 2.1e-27 126.7 175 48.0
SEGI_01011 Sequoiadendron giganteum HOM05D006369 ORTHO05D007764 3.9e-26 122.5 132 53.0
BraA03t10137Z Brassica rapa HOM05D006369 ORTHO05D007764 5.7e-25 118.6 151 51.7
unitig_747.g21708 Utricularia gibba HOM05D006369 ORTHO05D007764 9.7e-25 117.9 205 42.4
Hma1.2p1_1235F.1_g269100 Hydrangea macrophylla HOM05D006369 ORTHO05D007764 1.7e-24 117.1 147 52.4
CDE02G3455 Ceratophyllum demersum HOM05D006369 ORTHO05D007764 1.1e-23 114.4 165 46.1
Zm00001eb381130 Zea mays HOM05D006369 ORTHO05D007764 2.0e-22 110.2 172 46.5
CBR_g17900 Chara braunii HOM05D006369 ORTHO05D007764 2.3e-18 96.7 146 41.8
Sabra19G0056300 Salix brachista HOM05D006369 ORTHO05D007764 2.0e-17 93.6 95 58.9
C03p09390 Brassica napus HOM05D006369 ORTHO05D007764 7.5e-17 91.7 131 51.9
BcaB01g05232 Brassica carinata HOM05D006369 ORTHO05D007764 3.7e-16 89.4 111 55.9
AagrBONN_evm.TU.Sc2ySwM_344.1770 Anthoceros agrestis HOM05D006369 ORTHO05D007764 4.8e-16 89.0 226 34.1
BolC3t13440H Brassica oleracea HOM05D006369 ORTHO05D007764 6.3e-16 88.6 101 55.4
Pp3c20_5600 Physcomitrium patens HOM05D006369 ORTHO05D007764 3.5e-14 82.8 183 37.2
Mapoly0084s0069 Marchantia polymorpha HOM05D006369 ORTHO05D007764 1.7e-13 80.5 174 38.5
A03p08120 Brassica napus HOM05D006369 ORTHO05D007764 1.9e-12 77.0 166 40.4
SMO141G0301 Selaginella moellendorffii HOM05D006369 ORTHO05D007764 7.2e-12 75.1 133 39.1
Cpa.g.sc39.77 Carica papaya HOM05D006369 ORTHO05D007764 9.4e-12 74.7 50 74.0
Dinv06133 Davidia involucrata HOM05D006369 ORTHO05D007764 1.8e-10 70.5 50 70.0
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 6.8e-10 68.6 52 65.4
Sabra19G0056200 Salix brachista HOM05D006369 ORTHO05D007764 1.7e-08 63.9 44 77.3
PGSC0003DMG401008641 Solanum tuberosum HOM05D006369 ORTHO05D007764 1.7e-08 63.9 96 49.0
QL10p024490 Quercus lobata HOM05D006369 ORTHO05D007764 1.8e-07 60.5 52 71.2
Cre10.g463700 Chlamydomonas reinhardtii HOM05D006369 ORTHO05D007764 7.0e-07 58.5 106 40.6
RcHm_v2.0_Chr5g0041771 Rosa chinensis HOM05D006369 ORTHO05D007764 2.0e-06 57.0 45 64.4


User provided reference genes

Program Settings