Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 2.5e-68 261.9 129 100.0
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 7.5e-44 180.6 98 85.7
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.2e-43 179.1 132 71.2
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.5e-36 156.4 136 61.0
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 6.3e-35 151.0 131 64.9
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 5.4e-34 147.9 130 60.0
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 4.5e-33 144.8 130 61.5
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 7.7e-33 144.1 131 60.3
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 2.9e-32 142.1 128 60.2
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.9e-32 142.1 126 61.9
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.2e-30 136.7 129 59.7
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.6e-30 136.3 132 60.6
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.0e-30 134.0 127 60.6
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.4e-29 133.3 128 59.4
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.8e-29 132.9 133 53.4
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 3.0e-29 132.1 127 55.9
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.2e-29 131.3 126 60.3
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 6.8e-29 131.0 126 55.6
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.5e-28 129.8 135 54.1
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 1.5e-28 129.8 129 60.5
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.5e-28 129.8 125 56.8
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.0e-28 129.4 126 54.8
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.0e-28 129.4 127 59.1
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.0e-28 129.4 132 57.6
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.6e-28 129.0 128 60.2
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.4e-28 128.6 133 58.6
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.4e-28 128.3 125 57.6
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 4.4e-28 128.3 132 59.1
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.4e-28 128.3 125 55.2
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 7.5e-28 127.5 126 54.8
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.3e-27 126.7 127 53.5
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.3e-27 126.7 129 58.1
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.2e-27 125.9 132 52.3
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 2.8e-27 125.6 134 53.0
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.8e-27 125.6 127 61.4
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.8e-27 125.6 132 54.5
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 3.7e-27 125.2 136 54.4
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 4.9e-27 124.8 136 54.4
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 6.3e-27 124.4 132 53.8
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.1e-26 123.6 132 56.8
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 1.1e-26 123.6 127 60.6
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.8e-26 122.9 127 57.5
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 2.4e-26 122.5 129 55.0
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.1e-26 122.1 133 57.1
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.1e-26 122.1 132 57.6
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.1e-26 121.7 132 57.6
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.1e-26 121.7 132 57.6
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 4.1e-26 121.7 127 55.1
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 5.4e-26 121.3 128 54.7
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 5.4e-26 121.3 132 56.1
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.2e-25 120.2 137 51.8
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.2e-25 120.2 129 51.2
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 1.6e-25 119.8 125 56.0
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.6e-25 119.8 132 56.8
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.0e-25 119.4 127 59.1
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.0e-25 119.4 131 55.7
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 2.0e-25 119.4 132 56.1
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 2.0e-25 119.4 136 52.2
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.7e-25 119.0 128 52.3
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 4.5e-25 118.2 131 55.7
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 4.5e-25 118.2 126 55.6
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 4.5e-25 118.2 134 52.2
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 5.9e-25 117.9 131 54.2
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 7.8e-25 117.5 138 51.4
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.0e-24 117.1 134 54.5
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.0e-24 117.1 125 56.8
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.3e-24 116.7 128 54.7
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.9e-24 115.5 126 54.0
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.9e-24 115.5 89 60.7
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 2.9e-24 115.5 125 56.8
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 5.0e-24 114.8 135 51.9
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 6.6e-24 114.4 131 50.4
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.5e-23 113.2 125 55.2
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.3e-23 112.1 129 54.3
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 5.6e-23 111.3 125 53.6
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 7.3e-23 110.9 129 54.3
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.2e-22 110.2 126 54.0
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.6e-22 109.8 89 62.9
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.7e-22 108.2 130 54.6
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 6.1e-22 107.8 130 53.1
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 8.0e-22 107.5 87 62.1
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.8e-21 106.3 125 52.8
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.8e-21 106.3 90 62.2
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 2.3e-21 105.9 126 53.2
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 5.2e-21 104.8 126 51.6
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 5.2e-21 104.8 128 47.7
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.2e-20 103.6 132 51.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.2e-20 103.6 126 54.0
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.5e-20 103.2 123 48.0
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.5e-20 103.2 95 56.8
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.5e-20 103.2 124 50.0
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 3.4e-20 102.1 129 47.3
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.4e-20 102.1 119 49.6
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.4e-20 102.1 119 49.6
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.4e-20 102.1 119 49.6
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 3.4e-20 102.1 119 49.6
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 5.7e-20 101.3 90 60.0
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 5.7e-20 101.3 90 60.0
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.7e-20 101.3 131 52.7
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 9.8e-20 100.5 127 49.6
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 9.8e-20 100.5 103 56.3
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.3e-19 100.1 88 63.6
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.7e-19 99.8 134 46.3
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.2e-19 99.4 121 46.3
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 2.2e-19 99.4 137 45.3
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.2e-19 99.4 104 55.8
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 3.7e-19 98.6 130 51.5
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 4.9e-19 98.2 126 44.4
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 4.9e-19 98.2 125 48.8
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.9e-19 98.2 128 50.8
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 4.9e-19 98.2 129 45.0
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 8.3e-19 97.4 125 48.8
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-18 97.1 128 51.6
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 2.4e-18 95.9 126 46.0
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 3.2e-18 95.5 125 48.8
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.2e-18 95.5 129 50.4
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.2e-18 95.5 125 48.8
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 5.4e-18 94.7 127 46.5
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 9.2e-18 94.0 117 49.6
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.2e-17 93.6 130 43.8
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.2e-17 93.6 127 45.7
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.2e-17 93.6 130 43.8
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.2e-17 93.6 89 55.1
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.6e-17 93.2 122 41.8
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.6e-17 93.2 86 58.1
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.0e-17 92.8 130 43.1
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 2.0e-17 92.8 89 56.2
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.7e-17 92.4 164 42.1
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.5e-17 92.0 121 43.8
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 3.5e-17 92.0 127 45.7
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 4.6e-17 91.7 128 44.5
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.6e-17 91.7 127 41.7
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.6e-17 91.7 125 45.6
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.6e-17 91.7 127 43.3
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 5.9e-17 91.3 128 43.8
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 7.8e-17 90.9 90 52.2
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 7.8e-17 90.9 127 42.5
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 7.8e-17 90.9 127 42.5
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 7.8e-17 90.9 112 46.4
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.3e-16 90.1 132 43.9
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 2.3e-16 89.4 126 38.9
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 2.3e-16 89.4 127 41.7
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 2.3e-16 89.4 92 53.3
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 3.0e-16 89.0 126 42.1
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 3.0e-16 89.0 91 50.5
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 3.0e-16 89.0 86 58.1
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 5.0e-16 88.2 127 44.1
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 5.0e-16 88.2 127 44.1
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.0e-16 88.2 127 43.3
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 5.0e-16 88.2 94 48.9
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 6.6e-16 87.8 130 42.3
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 6.6e-16 87.8 130 42.3
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 8.6e-16 87.4 126 39.7
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.6e-16 87.4 128 49.2
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 1.1e-15 87.0 105 45.7
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 1.9e-15 86.3 126 41.3
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.9e-15 86.3 96 49.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.9e-15 86.3 133 42.9
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.5e-15 85.9 111 50.5
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 9.5e-15 84.0 125 48.0
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 9.5e-15 84.0 126 46.0
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.2e-14 83.6 116 48.3
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.2e-14 83.6 125 44.8
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.2e-14 83.6 130 41.5
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.6e-14 83.2 154 39.0
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.6e-14 83.2 126 41.3
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.8e-14 82.4 132 43.2
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.7e-14 81.6 86 51.2
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 6.2e-14 81.3 108 49.1
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.1e-13 80.5 85 44.7
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 3.1e-13 79.0 128 43.0
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.0e-13 78.6 124 43.5
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.0e-13 78.6 124 43.5
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 6.8e-13 77.8 123 40.7
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.8e-13 77.8 92 51.1
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.0e-12 76.3 116 43.1
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 3.4e-12 75.5 131 36.6
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 5.8e-12 74.7 116 46.6
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.8e-12 74.7 115 41.7
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.7e-11 72.0 94 47.9
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 3.7e-11 72.0 127 36.2
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.0e-09 66.2 62 54.8
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.8e-09 64.3 86 40.7
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.0e-08 62.4 86 40.7
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.0e-08 61.6 93 40.9
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 2.8e-06 55.8 95 40.0


User provided reference genes

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