Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 7.4e-124 447.2 222 100.0
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 7.4e-124 447.2 222 100.0
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.6e-89 332.4 235 78.3
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 1.2e-22 110.9 263 37.3
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.6e-22 110.5 274 35.0
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.1e-21 107.8 269 34.6
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 4.0e-21 105.9 231 35.5
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.9e-21 105.1 202 40.6
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 1.2e-20 104.4 212 37.3
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.8e-19 99.4 190 38.9
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.1e-18 97.8 162 42.6
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.2e-18 96.3 161 41.0
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.5e-17 92.8 134 44.0
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.0e-17 92.0 134 44.0
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.0e-16 91.3 99 52.5
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 2.3e-16 90.1 134 43.3
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 8.7e-16 88.2 141 39.0
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 1.9e-15 87.0 231 31.2
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.5e-15 86.7 173 37.0
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.3e-15 86.3 183 36.1
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 2.1e-14 83.6 148 39.2
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 3.6e-14 82.8 104 45.2
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 6.2e-14 82.0 151 41.1
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 8.1e-14 81.6 137 41.6
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 8.1e-14 81.6 250 30.8
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 1.1e-13 81.3 142 39.4
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 3.1e-13 79.7 159 37.1
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 3.1e-13 79.7 75 60.0
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 5.3e-13 79.0 95 48.4
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.9e-13 78.6 129 38.8
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 9.0e-13 78.2 90 47.8
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 9.0e-13 78.2 90 47.8
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.0e-12 77.0 115 43.5
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.6e-12 76.6 123 41.5
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.6e-12 76.6 116 43.1
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.6e-12 76.6 138 36.2
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 4.5e-12 75.9 171 36.8
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 7.6e-12 75.1 112 44.6
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 7.6e-12 75.1 77 53.2
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 7.6e-12 75.1 149 36.2
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 9.9e-12 74.7 73 54.8
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 9.9e-12 74.7 137 40.1
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 1.3e-11 74.3 112 41.1
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.3e-11 74.3 75 52.0
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 1.3e-11 74.3 98 44.9
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 2.9e-11 73.2 142 40.1
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 2.9e-11 73.2 124 40.3
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 2.9e-11 73.2 162 33.3
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 2.9e-11 73.2 91 46.2
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 3.8e-11 72.8 105 40.0
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 4.9e-11 72.4 161 32.9
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 6.4e-11 72.0 122 42.6
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 8.4e-11 71.6 146 39.0
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 8.4e-11 71.6 73 53.4
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 8.4e-11 71.6 126 34.9
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 8.4e-11 71.6 140 35.7
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 8.4e-11 71.6 112 39.3
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 8.4e-11 71.6 103 42.7
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.1e-10 71.2 110 43.6
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.1e-10 71.2 104 41.3
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 1.1e-10 71.2 83 47.0
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-10 71.2 83 47.0
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-10 71.2 83 47.0
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-10 71.2 67 53.7
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-10 71.2 67 53.7
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 1.1e-10 71.2 77 50.6
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.4e-10 70.9 111 44.1
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.4e-10 70.9 129 35.7
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.4e-10 70.9 82 47.6
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.4e-10 70.9 121 40.5
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 1.9e-10 70.5 198 30.3
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 2.4e-10 70.1 123 42.3
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 2.4e-10 70.1 123 43.1
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 3.2e-10 69.7 79 50.6
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 3.2e-10 69.7 107 42.1
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 4.2e-10 69.3 144 36.8
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 5.4e-10 68.9 141 36.9
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 5.4e-10 68.9 73 47.9
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 5.4e-10 68.9 191 31.4
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 9.3e-10 68.2 95 41.1
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 9.3e-10 68.2 73 49.3
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 1.2e-09 67.8 161 35.4
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 1.2e-09 67.8 73 52.1
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.2e-09 67.8 111 40.5
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 1.6e-09 67.4 73 52.1
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.6e-09 67.4 109 40.4
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.6e-09 67.4 109 37.6
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.6e-09 67.4 85 44.7
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 1.6e-09 67.4 73 46.6
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 2.1e-09 67.0 63 52.4
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.1e-09 67.0 109 37.6
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 2.7e-09 66.6 90 47.8
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 2.7e-09 66.6 204 31.9
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 2.7e-09 66.6 100 40.0
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 4.6e-09 65.9 157 36.9
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 4.6e-09 65.9 157 36.9
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 4.6e-09 65.9 148 35.1
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 6.0e-09 65.5 63 54.0
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 6.0e-09 65.5 63 54.0
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 6.0e-09 65.5 74 45.9
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 6.0e-09 65.5 89 40.4
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 1.0e-08 64.7 61 55.7
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.0e-08 64.7 109 36.7
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 1.0e-08 64.7 95 36.8
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 1.3e-08 64.3 65 53.8
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-08 64.3 75 46.7
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.3e-08 64.3 75 46.7
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.3e-08 64.3 75 46.7
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 1.8e-08 63.9 106 37.7
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 1.8e-08 63.9 108 36.1
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 2.3e-08 63.5 139 36.7
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 2.3e-08 63.5 133 30.8
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 3.0e-08 63.2 61 50.8
CAN.G689.16 Capsicum annuum HOM05D004520 ORTHO05D005520 3.0e-08 63.2 63 50.8
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 3.0e-08 63.2 136 36.8
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 3.9e-08 62.8 146 31.5
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 3.9e-08 62.8 170 34.1
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 3.9e-08 62.8 170 34.1
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 3.9e-08 62.8 61 50.8
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 3.9e-08 62.8 97 38.1
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 5.1e-08 62.4 61 50.8
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 5.1e-08 62.4 61 52.5
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 1.1e-07 61.2 93 40.9
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.5e-07 60.8 68 45.6
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 1.9e-07 60.5 47 57.4
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 2.5e-07 60.1 73 46.6
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 2.5e-07 60.1 61 49.2
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.3e-07 59.7 81 40.7
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 3.6e-06 56.2 58 51.7
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 4.8e-06 55.8 94 38.3


User provided reference genes

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