Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 5.5e-259 897.1 455 100.0
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 1.8e-217 759.2 473 85.6
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 1.3e-215 753.1 479 82.3
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 5.6e-211 737.6 476 81.7
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 3.1e-201 705.3 480 76.7
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 4.0e-201 704.9 480 77.1
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 7.6e-200 700.7 477 76.1
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 9.9e-200 700.3 479 76.2
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 1.3e-199 699.9 480 75.8
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.9e-199 698.0 479 76.2
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 9.2e-198 693.7 480 75.2
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 5.1e-196 688.0 480 73.8
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 5.1e-196 688.0 477 75.5
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 5.1e-196 688.0 480 74.4
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 7.3e-195 684.1 475 75.4
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 9.6e-195 683.7 479 74.5
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 2.1e-194 682.6 480 74.6
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 4.7e-194 681.4 480 74.6
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 8.1e-194 680.6 479 74.5
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.8e-193 679.5 482 74.9
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 2.4e-193 679.1 476 74.4
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 4.0e-193 678.3 482 74.3
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 1.5e-192 676.4 479 74.1
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 2.6e-192 675.6 480 73.3
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 2.2e-191 672.5 477 73.6
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 2.9e-191 672.2 477 74.0
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 3.8e-191 671.8 475 74.1
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 1.4e-190 669.8 474 74.5
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 3.2e-190 668.7 482 73.9
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 3.5e-189 665.2 479 72.4
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 1.7e-188 662.9 479 73.5
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 2.3e-188 662.5 516 69.6
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.9e-187 659.4 477 72.1
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 2.5e-187 659.1 477 72.1
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 2.5e-187 659.1 481 74.8
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 3.3e-187 658.7 480 71.5
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 7.3e-187 657.5 481 73.8
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 9.6e-187 657.1 477 71.9
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 3.6e-186 655.2 479 72.9
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 6.9e-185 651.0 455 76.0
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 7.6e-184 647.5 480 70.0
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 4.9e-183 644.8 479 72.2
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 3.2e-182 642.1 483 70.8
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 5.4e-182 641.3 477 70.4
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 6.0e-181 637.9 472 70.8
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 7.9e-181 637.5 480 68.3
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 7.9e-181 637.5 477 71.3
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 1.0e-180 637.1 494 69.2
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 6.7e-180 634.4 477 70.0
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 7.4e-179 630.9 486 68.5
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 1.3e-178 630.2 421 77.2
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 1.6e-178 629.8 478 70.5
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 1.6e-178 629.8 486 68.3
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 4.8e-178 628.2 482 69.3
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 1.8e-177 626.3 479 69.1
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 1.8e-177 626.3 481 68.2
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 2.4e-177 625.9 478 69.9
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 9.0e-177 624.0 478 69.5
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 9.0e-177 624.0 483 67.5
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 1.2e-176 623.6 511 65.9
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 1.2e-176 623.6 477 68.8
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 5.5e-174 614.8 477 68.3
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.6e-173 613.2 477 69.0
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 4.6e-173 611.7 478 69.0
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 1.0e-172 610.5 477 68.1
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.0e-172 610.5 479 68.1
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 1.3e-172 610.1 480 67.5
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 6.7e-172 607.8 476 67.0
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 5.6e-171 604.7 480 66.7
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 9.6e-171 604.0 477 67.1
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 9.6e-171 604.0 480 66.7
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 2.1e-170 602.8 479 64.7
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 2.1e-170 602.8 479 67.6
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 3.1e-169 599.0 477 66.5
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 3.1e-169 599.0 477 66.5
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 3.1e-169 599.0 477 66.5
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 4.0e-169 598.6 477 66.7
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 2.6e-168 595.9 477 66.2
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 2.6e-168 595.9 456 70.4
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 5.8e-168 594.7 477 65.8
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 2.5e-166 589.3 477 66.0
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 3.0e-164 582.4 412 74.3
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 2.4e-161 572.8 534 61.0
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.1e-161 572.0 456 68.4
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 1.1e-158 563.9 444 68.0
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 2.7e-157 559.3 474 64.6
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 2.7e-157 559.3 475 63.4
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 1.0e-156 557.4 475 63.4
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 2.3e-156 556.2 463 66.1
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 1.5e-155 553.5 476 63.0
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 3.3e-155 552.4 477 63.7
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 6.3e-154 548.1 423 66.9
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 1.2e-152 543.9 484 61.2
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 5.5e-150 535.0 496 58.9
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 7.2e-150 534.6 413 69.5
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 6.7e-148 528.1 442 65.6
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 1.5e-147 526.9 372 76.9
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.8e-145 520.0 376 74.2
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 2.2e-143 513.1 382 69.6
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 6.5e-143 511.5 577 52.3
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 5.7e-139 498.4 311 81.0
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 1.1e-137 494.2 379 67.3
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.1e-134 484.2 483 56.7
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 6.1e-133 478.4 463 57.2
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 6.7e-132 474.9 350 74.0
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 5.0e-127 458.8 311 76.2
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 4.7e-125 452.2 341 68.3
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 1.8e-116 423.7 374 59.1
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 1.7e-114 417.2 809 36.7
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 1.2e-112 411.0 459 51.4
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 6.4e-106 388.7 448 49.3
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 4.1e-105 386.0 450 50.4
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 4.6e-104 382.5 450 50.2
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 3.9e-103 379.4 451 49.2
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 8.6e-103 378.3 450 50.2
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 1.1e-102 377.9 248 79.0
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 2.5e-102 376.7 451 48.8
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 1.8e-100 370.5 449 49.7
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.7e-98 364.0 469 46.9
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 9.2e-97 358.2 451 47.9
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 6.0e-96 355.5 442 46.8
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 9.5e-94 348.2 408 50.5
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 3.6e-93 346.3 367 52.3
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 8.1e-93 345.1 407 48.9
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 1.1e-92 344.7 367 52.3
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 6.4e-82 308.9 499 40.3
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 2.3e-79 300.4 448 45.1
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 8.4e-74 282.0 229 66.4
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 8.7e-71 271.9 241 63.1
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 7.1e-65 252.3 478 35.6
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 4.6e-64 249.6 253 56.9
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 2.8e-61 240.4 309 45.6
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.6e-53 214.5 211 55.5
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 2.1e-40 171.0 202 47.5
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 4.3e-38 163.3 102 76.5
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 2.2e-37 161.0 526 30.6
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 3.8e-34 150.2 214 44.9
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 6.5e-34 149.4 174 51.7
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.4e-33 148.3 106 69.8
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 6.1e-16 89.7 91 50.5
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 2.8e-13 80.9 63 68.3
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 9.4e-09 65.9 138 31.9
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 8.8e-07 59.3 371 22.4
HanXRQChr01g0001151 Helianthus annuus HOM05D001663 ORTHO05D005717 4.4e-06 57.0 117 36.8
PRCOL_00005117 Prasinoderma coloniale HOM05D001663 ORTHO05D005717 9.8e-06 55.8 302 23.8


User provided reference genes

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