Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 2.1e-205 718.8 360 100.0
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 8.5e-146 520.8 313 85.9
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 1.4e-143 513.5 350 75.4
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.1e-140 503.8 350 75.4
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 8.8e-135 484.2 350 72.3
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 9.4e-129 464.2 350 68.9
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 3.0e-127 459.1 350 68.3
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 1.2e-126 457.2 350 67.7
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.2e-126 457.2 350 68.9
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.4e-126 455.3 356 66.6
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.4e-124 450.3 348 67.5
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 5.4e-124 448.4 353 64.9
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 5.4e-124 448.4 350 67.1
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 3.8e-122 442.2 350 66.9
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.0e-122 441.8 377 63.7
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 8.5e-122 441.0 369 63.7
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.1e-121 440.7 342 67.3
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.1e-121 440.7 350 67.4
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 7.2e-121 438.0 351 64.1
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.6e-120 436.8 359 63.5
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.6e-120 435.6 350 66.3
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 6.1e-120 434.9 350 64.3
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 2.3e-119 433.0 358 63.4
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 8.8e-119 431.0 352 66.2
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 4.4e-118 428.7 350 64.0
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 7.5e-118 427.9 350 65.4
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 2.8e-117 426.0 348 64.4
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 4.9e-117 425.2 340 65.0
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.4e-116 423.7 346 63.6
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.4e-116 423.7 334 66.8
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 5.4e-116 421.8 357 63.3
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 5.4e-116 421.8 341 64.5
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 7.0e-116 421.4 348 62.4
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 7.0e-116 421.4 335 67.5
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.2e-115 420.6 332 67.8
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.6e-115 420.2 348 64.1
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.0e-115 419.9 350 63.1
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 5.9e-115 418.3 334 65.9
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.0e-114 417.5 334 66.2
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.3e-114 416.4 335 64.8
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 2.9e-114 416.0 349 61.9
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 6.6e-114 414.8 350 60.9
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 6.6e-114 414.8 347 62.8
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 6.6e-114 414.8 337 62.9
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 8.6e-114 414.5 373 59.8
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 8.6e-114 414.5 348 61.8
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 8.6e-114 414.5 349 61.3
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 1.1e-113 414.1 343 63.3
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.5e-113 413.7 332 66.3
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.9e-113 413.3 346 63.3
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 7.2e-113 411.4 343 62.7
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 7.2e-113 411.4 334 64.4
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 9.5e-113 411.0 334 64.4
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 1.6e-112 410.2 349 61.0
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.6e-112 410.2 346 63.6
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 3.6e-112 409.1 348 62.1
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 4.7e-112 408.7 352 61.1
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 6.1e-112 408.3 363 60.9
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.3e-111 406.4 354 62.4
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 8.9e-111 404.4 298 70.1
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 2.6e-110 402.9 332 64.8
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 3.4e-110 402.5 343 61.8
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 4.4e-110 402.1 350 61.4
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 5.7e-110 401.7 348 60.1
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 7.5e-110 401.4 322 64.0
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 7.5e-110 401.4 348 59.8
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 1.3e-109 400.6 338 62.7
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 1.7e-109 400.2 348 59.8
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.7e-109 400.2 348 61.5
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 8.3e-109 397.9 344 59.0
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.1e-108 397.5 357 58.5
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 1.1e-108 397.5 348 61.2
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 1.4e-108 397.1 297 68.0
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 1.8e-108 396.7 347 60.8
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 2.4e-108 396.4 389 55.8
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 2.4e-108 396.4 345 62.0
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 2.4e-108 396.4 350 60.9
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 9.2e-108 394.4 361 60.1
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 1.2e-107 394.0 332 59.9
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 1.6e-107 393.7 330 61.2
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 4.6e-107 392.1 298 67.1
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 5.9e-107 391.7 350 58.9
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.0e-106 391.0 376 58.0
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 1.3e-106 390.6 328 62.5
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 3.9e-106 389.0 329 61.1
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.9e-106 389.0 347 61.7
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 5.0e-106 388.7 418 52.9
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.1e-105 387.5 321 62.6
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 1.1e-105 387.5 326 61.3
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.5e-105 387.1 328 61.0
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 3.3e-105 386.0 299 65.2
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 7.3e-105 384.8 336 60.4
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 8.0e-104 381.3 327 60.6
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 8.0e-104 381.3 346 60.7
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.4e-103 380.6 301 66.4
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 2.3e-103 379.8 326 60.4
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 3.1e-103 379.4 307 64.5
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.2e-103 378.6 387 54.0
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 6.8e-103 378.3 355 57.2
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 3.4e-102 375.9 339 61.4
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 4.4e-102 375.6 288 67.7
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.7e-101 373.6 332 59.6
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.9e-101 372.9 332 59.0
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 2.9e-101 372.9 346 58.1
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 4.1e-100 369.0 334 59.3
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 9.2e-100 367.9 324 60.8
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 2.0e-99 366.7 347 57.1
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.3e-98 363.2 332 57.5
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 1.2e-96 357.5 330 58.5
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 2.8e-96 356.3 279 64.5
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 1.1e-95 354.4 353 55.0
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.9e-92 343.6 351 54.4
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.1e-92 341.7 336 57.1
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 1.2e-91 340.9 343 55.4
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 4.6e-91 339.0 329 54.7
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 4.6e-91 339.0 328 55.8
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 6.6e-90 335.1 273 61.5
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 4.3e-89 332.4 329 52.6
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.6e-88 329.3 458 46.1
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.8e-87 327.0 345 52.8
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 1.8e-87 327.0 327 53.5
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 3.4e-86 322.8 335 51.3
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 5.8e-86 322.0 334 53.3
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 2.9e-85 319.7 255 67.8
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 1.8e-79 300.4 260 59.2
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 4.2e-76 289.3 335 52.2
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 9.6e-73 278.1 208 65.9
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.4e-71 273.5 319 48.9
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 8.7e-66 255.0 237 60.8
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.0e-63 246.1 334 45.5
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 2.6e-62 243.4 212 61.8
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 4.2e-60 236.1 196 66.3
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 2.3e-58 230.3 241 54.8
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.3e-56 224.6 187 62.0
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 2.1e-56 223.8 180 65.6
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 8.1e-56 221.9 210 57.1
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 2.9e-53 213.4 366 38.3
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.9e-52 210.7 196 60.2
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 2.5e-52 210.3 289 42.9
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 2.5e-52 210.3 147 72.1
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 4.2e-52 209.5 201 57.2
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.2e-52 209.5 294 45.2
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 5.5e-52 209.1 247 45.7
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 1.6e-51 207.6 222 50.0
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 2.7e-51 206.8 196 58.7
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.0e-50 203.4 274 47.1
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 4.3e-49 199.5 150 68.7
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 6.3e-48 195.7 138 73.9
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 9.0e-47 191.8 132 75.0
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 7.6e-46 188.7 134 69.4
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 6.5e-45 185.7 308 39.0
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.4e-44 184.5 244 44.7
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.8e-39 167.5 116 70.7
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 1.5e-38 164.5 317 39.1
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 7.7e-38 162.2 112 71.4
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.9e-36 157.5 169 45.6
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 1.9e-36 157.5 149 57.7
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 2.8e-32 143.7 105 72.4
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.1e-31 140.2 208 42.8
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 1.1e-25 121.7 116 58.6
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.7e-24 116.7 168 43.5
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 8.2e-24 115.5 118 53.4
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 5.3e-23 112.8 83 71.1
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 7.2e-20 102.4 83 67.5
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.6e-19 100.1 129 42.6
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.7e-19 99.8 67 70.1
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 5.7e-17 92.8 65 75.4
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 9.7e-17 92.0 65 73.8
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 8.5e-13 79.0 85 51.8
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 3.2e-12 77.0 88 45.5
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 4.2e-12 76.6 44 81.8
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.2e-12 76.6 92 45.7
Lj4A710G53 Lonicera japonica HOM05D003898 ORTHO05D004642 5.9e-06 56.2 29 72.4


User provided reference genes

Program Settings