Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 1.9e-93 345.9 186 100.0
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 2.0e-50 203.0 110 96.4
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 1.4e-48 196.8 110 91.8
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 2.1e-47 193.0 110 91.8
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 2.7e-47 192.6 110 91.8
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 8.0e-47 191.0 144 73.6
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 1.0e-46 190.7 112 87.5
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 1.0e-46 190.7 110 88.2
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.8e-46 189.9 110 89.1
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.3e-46 189.5 110 89.1
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 2.3e-46 189.5 110 89.1
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 5.2e-46 188.3 110 89.1
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 8.8e-46 187.6 112 88.4
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 1.1e-45 187.2 108 88.9
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 1.5e-45 186.8 110 90.0
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.5e-45 186.8 110 87.3
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 2.0e-45 186.4 110 85.5
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 2.6e-45 186.0 112 84.8
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 3.3e-45 185.7 110 86.4
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 3.3e-45 185.7 110 85.5
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 4.4e-45 185.3 110 87.3
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 4.4e-45 185.3 110 85.5
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 7.4e-45 184.5 110 86.4
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 9.7e-45 184.1 110 82.7
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 9.7e-45 184.1 110 87.3
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 9.7e-45 184.1 113 85.0
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 1.7e-44 183.3 110 83.6
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 1.7e-44 183.3 114 86.0
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 2.8e-44 182.6 110 84.5
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.8e-44 182.6 110 85.5
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 2.8e-44 182.6 110 85.5
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 2.8e-44 182.6 110 85.5
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 2.8e-44 182.6 110 85.5
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 3.7e-44 182.2 110 84.5
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 3.7e-44 182.2 110 84.5
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 8.2e-44 181.0 111 84.7
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 8.2e-44 181.0 109 82.6
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 1.1e-43 180.6 110 82.7
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.1e-43 180.6 110 84.5
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 1.1e-43 180.6 110 83.6
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 1.1e-43 180.6 112 83.9
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 1.1e-43 180.6 110 84.5
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 1.8e-43 179.9 110 82.7
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.8e-43 179.9 110 82.7
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 1.8e-43 179.9 110 85.5
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 2.4e-43 179.5 110 81.8
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 3.1e-43 179.1 110 83.6
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 5.3e-43 178.3 110 82.7
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 5.3e-43 178.3 110 82.7
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 5.3e-43 178.3 110 82.7
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 7.0e-43 177.9 110 84.5
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 9.1e-43 177.6 110 81.8
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 9.1e-43 177.6 110 81.8
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 9.1e-43 177.6 110 81.8
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 9.1e-43 177.6 110 81.8
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 9.1e-43 177.6 110 81.8
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 9.1e-43 177.6 110 82.7
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 9.1e-43 177.6 110 84.5
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 1.2e-42 177.2 110 81.8
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.2e-42 177.2 110 81.8
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 1.2e-42 177.2 111 82.0
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 1.2e-42 177.2 110 83.6
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.6e-42 176.8 110 80.9
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 1.6e-42 176.8 109 82.6
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.6e-42 176.8 110 80.9
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 2.6e-42 176.0 110 79.1
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 3.5e-42 175.6 110 80.0
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 3.5e-42 175.6 110 84.5
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 3.5e-42 175.6 110 81.8
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 3.5e-42 175.6 110 80.9
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 3.5e-42 175.6 110 82.7
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 4.5e-42 175.3 110 80.0
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 1.0e-41 174.1 110 83.6
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.0e-41 174.1 112 77.7
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 1.0e-41 174.1 112 77.7
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 1.0e-41 174.1 112 77.7
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 1.0e-41 174.1 112 77.7
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 1.0e-41 174.1 110 81.8
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 1.0e-41 174.1 110 83.6
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.3e-41 173.7 104 82.7
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 1.7e-41 173.3 110 80.0
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.7e-41 173.3 103 81.6
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 1.7e-41 173.3 109 79.8
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 1.7e-41 173.3 109 80.7
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 2.2e-41 172.9 109 78.0
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 2.9e-41 172.6 112 76.8
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 3.8e-41 172.2 109 78.0
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 3.8e-41 172.2 111 78.4
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 5.0e-41 171.8 110 81.8
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 5.0e-41 171.8 110 81.8
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 6.5e-41 171.4 110 81.8
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 1.1e-40 170.6 119 76.5
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 1.5e-40 170.2 109 78.0
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 1.5e-40 170.2 109 82.6
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 1.5e-40 170.2 112 76.8
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.9e-40 169.9 141 64.5
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.5e-40 169.5 110 80.9
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 3.2e-40 169.1 110 77.3
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.2e-40 168.7 110 80.9
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 4.2e-40 168.7 109 78.0
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 9.4e-40 167.5 110 80.9
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.6e-39 166.8 109 78.0
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 4.7e-39 165.2 110 81.8
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 8.0e-39 164.5 167 59.9
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 8.0e-39 164.5 110 78.2
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 4.0e-38 162.2 110 75.5
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 9.7e-37 157.5 150 58.0
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.9e-34 148.3 110 73.6
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 3.8e-33 145.6 103 74.8
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 1.5e-32 143.7 171 50.3
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 7.2e-32 141.4 110 68.2
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 2.1e-31 139.8 94 74.5
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 3.0e-30 136.0 125 60.0
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 1.1e-27 127.5 100 67.0
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 5.4e-27 125.2 87 79.3
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 2.0e-26 123.2 90 73.3
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 3.5e-26 122.5 111 55.9
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 1.0e-25 120.9 71 88.7
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 1.2e-23 114.0 109 61.5
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 3.6e-23 112.5 79 73.4
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 2.2e-20 103.2 115 47.8
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 3.1e-19 99.4 89 65.2
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 1.2e-15 87.4 46 93.5
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 1.2e-15 87.4 46 93.5
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 1.2e-15 87.4 46 93.5
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 1.6e-15 87.0 79 60.8
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 1.8e-14 83.6 45 91.1
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 4.0e-14 82.4 53 77.4
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 4.0e-14 82.4 49 83.7
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 1.3e-12 77.4 79 50.6
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 3.0e-09 66.2 51 70.6
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 4.7e-07 58.9 43 67.4
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 3.1e-06 56.2 36 75.0
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 5.2e-06 55.5 42 66.7


User provided reference genes

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