Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 1.1e-113 413.3 209 100.0
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 9.4e-97 357.1 214 87.4
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.0e-66 257.3 227 65.6
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.5e-65 253.4 217 65.9
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 3.6e-64 248.8 216 66.7
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.4e-63 246.9 220 62.7
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 8.3e-61 237.7 214 62.6
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 3.5e-59 232.3 215 60.0
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 5.1e-58 228.4 226 59.3
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.1e-57 227.3 212 61.8
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.3e-57 225.7 223 59.2
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 5.6e-57 224.9 220 59.5
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 5.6e-57 224.9 230 57.0
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.6e-56 222.2 217 59.9
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.7e-56 221.9 214 61.2
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.7e-56 221.9 214 61.2
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 8.1e-56 221.1 189 65.6
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.8e-55 219.9 212 61.8
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.2e-54 217.2 221 57.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.4e-54 215.7 213 58.7
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 7.5e-54 214.5 209 58.9
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.3e-53 213.8 216 55.6
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.2e-53 213.0 210 60.5
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.9e-53 212.6 210 60.5
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 6.4e-53 211.5 209 59.3
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 6.4e-53 211.5 209 58.4
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 8.3e-53 211.1 210 60.0
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 8.3e-53 211.1 227 55.1
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 8.3e-53 211.1 210 59.5
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.1e-52 210.7 243 55.6
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 3.2e-52 209.1 209 57.9
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 4.1e-52 208.8 241 56.4
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 7.1e-52 208.0 210 59.5
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.1e-51 206.5 189 61.4
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 7.8e-51 204.5 218 54.6
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.0e-50 204.1 211 54.0
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.6e-50 201.1 227 54.6
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 8.6e-50 201.1 219 53.0
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 2.5e-49 199.5 218 54.6
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 7.3e-49 198.0 222 54.5
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 6.2e-48 194.9 207 57.5
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.1e-48 194.5 227 52.4
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.1e-47 194.1 220 51.8
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-47 194.1 227 51.1
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.4e-47 193.7 221 55.7
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 5.2e-47 191.8 227 51.1
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 6.8e-47 191.4 218 53.2
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.9e-47 191.0 221 54.8
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 8.9e-47 191.0 221 55.2
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 1.5e-46 190.3 229 53.7
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.0e-46 189.9 236 53.8
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 5.8e-46 188.3 238 49.2
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.7e-45 186.8 211 52.1
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 2.9e-45 186.0 231 51.1
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 2.9e-45 186.0 235 51.1
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 3.8e-45 185.7 224 53.1
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 8.4e-45 184.5 251 48.2
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.4e-44 183.7 219 53.9
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 2.4e-44 183.0 227 52.9
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 2.4e-44 183.0 208 53.8
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.7e-42 176.8 209 50.7
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 3.0e-42 176.0 216 50.9
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 8.7e-42 174.5 207 47.3
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 8.7e-42 174.5 213 49.8
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.1e-41 174.1 208 51.0
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.5e-41 173.7 216 49.5
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.9e-41 173.3 221 50.7
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 3.3e-41 172.6 164 62.2
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 5.6e-41 171.8 215 48.4
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 9.6e-41 171.0 214 49.5
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.6e-41 171.0 221 52.5
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.8e-40 169.5 206 48.5
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 2.8e-40 169.5 231 49.8
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 3.6e-40 169.1 210 44.8
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 6.2e-40 168.3 234 46.6
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 6.2e-40 168.3 196 54.1
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.1e-39 167.5 210 44.3
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.8e-39 166.8 219 47.9
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 3.1e-39 166.0 222 48.6
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 3.1e-39 166.0 222 48.6
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.0e-39 165.6 213 48.4
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 5.3e-39 165.2 232 46.6
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 9.0e-39 164.5 198 51.0
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 9.0e-39 164.5 219 47.5
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 1.2e-38 164.1 219 47.5
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.2e-38 164.1 213 46.5
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.2e-38 164.1 210 48.1
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.0e-38 163.3 210 48.1
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.6e-38 162.9 199 47.7
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-38 162.5 214 46.7
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 3.4e-38 162.5 214 47.2
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 3.4e-38 162.5 214 46.7
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 3.4e-38 162.5 214 46.7
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 3.4e-38 162.5 214 47.2
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 3.4e-38 162.5 225 49.8
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 5.8e-38 161.8 218 47.7
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 5.8e-38 161.8 218 47.7
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 5.8e-38 161.8 218 47.7
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 9.9e-38 161.0 219 48.9
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-37 160.6 219 48.4
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.3e-37 160.6 218 50.9
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-37 160.2 218 47.2
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.7e-37 160.2 218 47.2
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-36 157.5 216 48.1
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.1e-36 157.5 216 48.1
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-36 157.5 216 48.1
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.1e-36 157.5 230 48.3
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.1e-36 157.5 235 46.4
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 1.9e-36 156.8 219 45.2
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 3.2e-36 156.0 216 47.7
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 3.2e-36 156.0 223 47.1
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 4.2e-36 155.6 212 45.3
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 5.4e-36 155.2 197 47.2
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 9.3e-36 154.5 194 48.5
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.2e-35 154.1 262 41.2
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 6.0e-35 151.8 198 46.0
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.0e-34 151.0 217 46.1
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 2.3e-34 149.8 218 44.0
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 3.9e-34 149.1 246 45.9
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 5.1e-34 148.7 219 46.1
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 5.1e-34 148.7 264 40.5
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 8.7e-34 147.9 202 44.1
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.5e-33 147.1 189 49.2
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 5.6e-33 145.2 210 44.3
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.6e-32 143.7 213 42.3
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.6e-32 143.7 223 44.4
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.1e-31 141.0 199 48.2
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 2.0e-30 136.7 206 44.2
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.6e-27 127.1 181 41.4
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-27 127.1 181 45.3
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.6e-27 127.1 187 43.9
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.6e-27 127.1 187 40.1
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 2.1e-27 126.7 200 41.5
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.7e-27 126.3 181 45.3
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 6.0e-27 125.2 205 40.5
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.1e-25 120.9 129 62.0
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 4.3e-25 119.0 104 59.6
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 5.6e-25 118.6 207 36.2
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 2.8e-24 116.3 157 47.8
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 8.1e-24 114.8 109 57.8
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.4e-23 113.2 208 37.0
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 2.4e-23 113.2 104 60.6
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 3.1e-23 112.8 200 39.5
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 1.5e-22 110.5 177 37.9
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 4.9e-21 105.5 181 39.2
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.4e-20 104.0 182 39.6
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 7.1e-20 101.7 178 39.3
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 9.3e-20 101.3 221 35.7
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.0e-19 98.6 182 39.6
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-17 94.0 224 35.3
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 9.6e-17 91.3 207 32.4
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.8e-15 87.0 118 50.0
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 4.0e-15 85.9 211 33.2
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 4.0e-15 85.9 224 33.5
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 5.3e-15 85.5 133 48.9
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 5.3e-15 85.5 254 34.6
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 5.3e-15 85.5 212 32.5
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.2e-14 84.3 204 31.9
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 4.5e-14 82.4 82 47.6
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.0e-13 81.3 176 35.8
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-13 80.9 193 34.2
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.3e-13 80.9 193 34.2
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.7e-13 80.5 85 49.4
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 6.5e-13 78.6 193 34.2
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 6.5e-13 78.6 193 34.2
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 6.5e-13 78.6 64 64.1
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 8.4e-13 78.2 193 33.7
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 2.5e-12 76.6 173 32.9
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 5.5e-12 75.5 196 33.2
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.3e-10 70.1 184 33.7
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.1e-07 59.7 121 38.0


User provided reference genes

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