Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 5.5e-167 590.9 294 100.0
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.2e-98 362.5 288 71.5
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 9.2e-82 307.8 290 60.0
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 6.0e-81 305.1 290 59.3
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.3e-80 303.1 248 69.8
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.6e-79 298.5 288 58.7
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 7.3e-79 298.1 291 57.0
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.1e-78 294.7 290 58.3
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 8.9e-77 291.2 289 57.8
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 8.9e-77 291.2 291 56.7
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 2.0e-76 290.0 291 55.7
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 3.4e-76 289.3 291 56.0
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 7.6e-76 288.1 291 54.6
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 3.8e-75 285.8 289 52.9
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 3.2e-74 282.7 290 54.1
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 9.2e-74 281.2 288 54.5
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.6e-73 278.9 289 54.0
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 1.0e-72 277.7 289 54.3
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 5.1e-72 275.4 291 52.6
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 5.1e-72 275.4 291 52.6
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 5.1e-72 275.4 292 52.4
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 6.6e-72 275.0 291 51.5
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 6.6e-72 275.0 288 51.4
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 1.1e-71 274.2 293 52.9
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 1.1e-71 274.2 289 53.3
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 2.5e-71 273.1 289 50.9
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.3e-71 272.7 291 51.9
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.3e-71 272.3 291 51.9
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 4.3e-71 272.3 291 51.9
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 5.6e-71 271.9 291 51.2
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.8e-70 269.6 293 50.5
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 2.8e-70 269.6 289 52.2
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.8e-70 269.6 288 52.8
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.6e-70 269.2 293 50.5
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 3.6e-70 269.2 289 52.2
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 3.6e-70 269.2 287 51.9
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 3.6e-70 269.2 289 50.9
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 6.2e-70 268.5 294 49.7
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.4e-69 267.3 288 51.4
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.4e-69 266.5 292 50.7
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.9e-69 265.0 291 49.8
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 6.9e-69 265.0 289 49.5
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 1.5e-68 263.8 290 51.7
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 2.0e-68 263.5 289 50.2
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.4e-68 262.7 291 49.8
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 3.4e-68 262.7 291 49.5
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 5.8e-68 261.9 290 51.4
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 9.9e-68 261.2 287 49.8
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 9.9e-68 261.2 324 46.6
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 1.3e-67 260.8 291 48.8
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.7e-67 260.4 290 51.4
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 2.2e-67 260.0 288 50.0
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 2.2e-67 260.0 288 50.3
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 3.8e-67 259.2 288 50.3
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 6.4e-67 258.5 327 45.6
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 8.4e-67 258.1 289 50.2
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 1.1e-66 257.7 290 51.0
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 1.4e-66 257.3 306 47.7
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.4e-66 257.3 290 51.0
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.9e-66 256.9 348 44.5
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 5.4e-66 255.4 288 49.0
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.1e-66 255.0 292 49.3
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 1.6e-65 253.8 290 49.0
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.0e-64 251.1 274 51.5
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.3e-64 250.8 290 49.0
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 1.3e-64 250.8 288 48.6
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 2.3e-64 250.0 289 47.4
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 3.0e-64 249.6 293 47.1
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.0e-64 249.6 269 51.7
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 3.9e-64 249.2 247 57.1
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 3.9e-64 249.2 274 50.7
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 8.7e-64 248.1 288 47.6
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 8.7e-64 248.1 288 47.6
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 1.1e-63 247.7 310 46.1
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 1.5e-63 247.3 287 47.7
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 2.5e-63 246.5 292 48.3
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 2.5e-63 246.5 266 53.8
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 3.3e-63 246.1 249 56.2
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 4.3e-63 245.7 287 46.7
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 5.6e-63 245.4 274 51.1
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 5.6e-63 245.4 289 49.5
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 7.3e-63 245.0 306 45.8
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 7.3e-63 245.0 272 50.7
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.3e-62 244.2 295 47.1
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 8.1e-62 241.5 288 46.5
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.8e-61 240.4 289 47.1
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 4.0e-61 239.2 289 47.4
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 6.9e-61 238.4 280 48.2
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.2e-60 237.7 289 45.0
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.5e-60 237.3 290 46.9
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 4.5e-60 235.7 258 50.8
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 4.5e-60 235.7 293 45.7
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 2.2e-59 233.4 289 48.4
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.8e-59 232.6 292 45.2
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.2e-58 229.6 292 46.6
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 4.2e-58 229.2 292 46.6
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 5.4e-58 228.8 308 43.5
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 9.3e-58 228.0 297 43.8
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.7e-57 226.5 246 51.2
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 2.7e-57 226.5 330 42.7
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 7.9e-57 224.9 297 42.8
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 1.3e-56 224.2 312 42.6
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 2.3e-56 223.4 289 45.0
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 5.1e-56 222.2 291 44.3
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 8.7e-56 221.5 290 43.1
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.1e-55 221.1 291 44.3
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 1.5e-55 220.7 313 40.6
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 4.3e-55 219.2 290 43.1
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 9.6e-55 218.0 288 43.8
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.8e-53 213.8 323 40.2
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 6.9e-53 211.8 292 41.8
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 6.9e-53 211.8 288 44.8
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-52 211.1 289 44.6
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 1.1e-50 204.5 290 41.4
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 5.5e-50 202.2 292 41.4
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 3.0e-48 196.4 214 51.9
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 3.4e-44 183.0 259 45.2
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 7.1e-42 175.3 288 39.2
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.1e-39 167.9 282 37.2
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 2.6e-36 156.8 288 36.1
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.1e-34 151.4 111 69.4
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.4e-34 151.0 174 47.1
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 9.3e-34 148.3 174 48.3
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.2e-33 147.9 289 38.8
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 1.5e-31 141.0 227 40.5
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.3e-31 139.8 280 36.4
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 4.3e-31 139.4 171 46.8
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.4e-29 134.4 150 46.7
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.8e-29 134.0 211 36.0
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 6.5e-27 125.6 105 60.0
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 6.5e-27 125.6 112 59.8
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 1.6e-25 120.9 128 50.0
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.7e-25 120.2 160 43.1
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 3.0e-24 116.7 154 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 8.8e-24 115.2 254 31.1
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 1.5e-23 114.4 238 28.2
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 4.4e-23 112.8 243 32.1
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 8.2e-22 108.6 87 62.1
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 2.4e-21 107.1 85 67.1
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 3.1e-21 106.7 274 30.3
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.0e-20 104.0 116 48.3
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.6e-20 103.6 287 30.3
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 6.5e-19 99.0 87 56.3
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.9e-18 97.4 253 30.8
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.9e-18 97.4 103 50.5
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 3.0e-16 90.1 121 45.5
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 8.2e-14 82.0 75 50.7
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.4e-13 81.3 120 41.7
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.8e-13 80.9 75 50.7
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.8e-13 80.9 75 50.7
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.5e-10 71.2 90 46.7
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.2e-10 70.1 59 57.6
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 9.4e-10 68.6 90 44.4
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.6e-09 67.8 77 45.5
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 1.6e-09 67.8 50 70.0


User provided reference genes

Program Settings