Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 7.3e-195 683.7 345 100.0
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 6.0e-173 610.9 323 96.0
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.6e-147 524.6 330 80.6
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 8.1e-146 520.8 323 80.2
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 1.6e-141 506.5 324 77.5
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 2.1e-141 506.1 324 77.8
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.9e-139 499.6 323 75.5
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 3.3e-139 498.8 324 78.1
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.6e-139 497.3 323 77.4
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.8e-138 495.7 335 73.4
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.4e-137 492.7 323 74.3
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 2.6e-136 489.2 324 73.1
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 7.6e-136 487.6 324 75.0
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 7.6e-136 487.6 326 74.8
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 1.0e-135 487.3 323 72.8
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 1.3e-135 486.9 323 73.4
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 1.3e-135 486.9 324 74.4
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.7e-135 486.5 323 74.0
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 2.2e-135 486.1 363 66.4
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 4.9e-135 485.0 324 74.4
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.5e-135 484.6 324 74.7
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 6.5e-135 484.6 326 73.9
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.5e-134 482.6 324 74.7
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.6e-133 479.9 325 73.2
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.6e-133 479.9 323 72.4
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.0e-132 477.2 323 72.4
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 3.0e-132 475.7 323 72.8
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.1e-131 473.8 323 73.1
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 4.3e-131 471.9 325 72.0
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 5.7e-131 471.5 323 72.1
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 3.7e-130 468.8 323 71.2
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 3.7e-130 468.8 324 69.1
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 8.2e-130 467.6 306 74.2
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 3.1e-129 465.7 323 71.5
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 9.0e-129 464.2 328 71.0
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 5.9e-128 461.5 325 70.2
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.9e-128 461.5 324 70.7
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 7.6e-128 461.1 327 70.6
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 1.7e-127 459.9 324 69.8
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.9e-127 459.1 324 70.4
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 8.5e-127 457.6 325 69.8
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.1e-126 457.2 324 70.4
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 3.2e-126 455.7 325 69.5
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 3.2e-126 455.7 300 75.3
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 2.1e-125 453.0 323 70.9
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.1e-125 453.0 338 67.5
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 2.7e-125 452.6 323 69.0
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.3e-124 450.3 323 70.3
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 1.8e-124 449.9 338 67.2
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 3.0e-124 449.1 324 67.9
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 3.9e-124 448.7 323 69.3
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 8.7e-124 447.6 325 70.5
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 1.5e-123 446.8 379 61.2
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.5e-123 446.8 392 59.9
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 1.9e-123 446.4 323 67.2
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 3.3e-123 445.7 324 70.4
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 9.7e-123 444.1 323 65.6
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.3e-122 443.7 323 65.6
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 8.2e-122 441.0 323 67.8
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 5.3e-121 438.3 341 64.8
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 5.3e-121 438.3 323 67.2
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 5.3e-121 438.3 326 67.8
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 9.1e-121 437.6 323 67.2
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.5e-120 436.8 323 68.4
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 1.7e-119 433.3 324 68.2
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 1.1e-118 430.6 323 63.2
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 2.5e-118 429.5 323 66.3
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 5.5e-118 428.3 325 67.7
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 7.2e-118 427.9 324 67.0
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 7.2e-118 427.9 364 61.0
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 7.9e-117 424.5 323 62.5
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 7.9e-117 424.5 323 65.9
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.8e-116 423.3 325 66.8
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 2.3e-116 422.9 323 65.6
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 2.3e-116 422.9 323 65.6
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 5.1e-116 421.8 323 67.5
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 6.7e-116 421.4 323 65.6
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 6.7e-116 421.4 324 67.6
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 6.7e-116 421.4 324 65.4
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 2.6e-115 419.5 333 63.4
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 2.6e-115 419.5 323 65.3
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 1.7e-114 416.8 326 65.3
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.7e-114 416.8 323 65.0
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 3.7e-114 415.6 324 63.9
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 6.3e-114 414.8 314 66.9
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-113 414.1 333 62.2
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 9.1e-113 411.0 349 59.3
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 3.8e-111 405.6 307 67.1
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 5.0e-111 405.2 359 58.8
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 2.7e-109 399.4 308 63.3
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 8.8e-108 394.4 327 60.2
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.1e-107 394.0 323 63.2
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 2.0e-107 393.3 370 56.8
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.2e-106 389.8 285 71.6
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 2.8e-106 389.4 327 60.6
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.8e-105 386.7 327 62.7
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 1.6e-104 383.6 326 58.9
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 5.9e-104 381.7 295 66.8
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 5.9e-104 381.7 323 61.9
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 7.7e-104 381.3 324 61.1
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 2.9e-103 379.4 362 56.1
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 1.6e-101 373.6 326 58.3
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 6.1e-101 371.7 221 81.0
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 1.4e-100 370.5 249 73.5
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 6.7e-100 368.2 327 58.4
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.3e-99 365.9 326 59.2
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 4.4e-99 365.5 326 59.5
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.2e-98 363.2 324 55.9
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.8e-98 362.8 306 62.1
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.8e-97 360.1 362 53.3
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 4.5e-96 355.5 323 55.1
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.3e-95 354.0 234 73.1
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.5e-94 349.7 267 64.4
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 2.5e-94 349.7 329 52.0
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 9.4e-94 347.8 346 52.9
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 3.1e-89 332.8 325 60.0
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 4.4e-83 312.4 294 61.9
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.9e-82 308.9 328 53.4
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 4.1e-81 305.8 290 59.3
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 6.8e-76 288.5 261 58.2
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 1.3e-74 284.3 308 50.3
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 8.3e-74 281.6 323 46.7
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 2.3e-71 273.5 210 67.6
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 8.6e-71 271.6 211 66.8
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 8.0e-69 265.0 323 47.1
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 8.0e-69 265.0 171 74.3
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 2.4e-65 253.4 247 50.2
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 6.8e-60 235.3 145 80.0
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 3.7e-58 229.6 174 66.7
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.6e-56 224.2 257 49.4
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 1.9e-54 217.2 165 67.3
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.1e-53 213.8 150 66.0
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 4.0e-52 209.5 163 63.8
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 2.6e-51 206.8 145 71.0
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 5.8e-51 205.7 127 75.6
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.0e-47 193.4 164 62.8
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 7.8e-40 168.7 151 55.6
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 3.0e-39 166.8 336 33.6
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.5e-38 164.5 339 35.7
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 2.1e-37 160.6 121 63.6
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.4e-33 147.1 120 61.7
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 9.3e-33 145.2 119 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 4.6e-32 142.9 214 36.4
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 2.3e-31 140.6 217 35.0
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 9.6e-30 135.2 83 74.7
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.3e-26 124.8 317 29.7
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 1.1e-22 111.7 96 63.5
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 2.5e-22 110.5 88 62.5
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 5.6e-22 109.4 118 50.8
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 4.8e-21 106.3 74 63.5
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.1e-20 105.1 74 63.5
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-20 105.1 74 63.5
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.5e-19 101.3 84 58.3
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 2.0e-19 100.9 86 65.1
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.1e-17 95.1 77 55.8
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 2.1e-16 90.9 58 77.6
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 1.5e-14 84.7 60 73.3
Medtr3g091670 Medicago truncatula HOM05D004457 ORTHO05D005282 1.7e-10 71.2 60 63.3
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 2.2e-10 70.9 55 72.7
arahy.Tifrunner.gnm1.ann1.G80LMI Arachis hypogaea HOM05D004457 ORTHO05D082520 2.3e-07 60.8 38 76.3
Gohir.A11G267601 Gossypium hirsutum HOM05D004457 ORTHO05D005282 5.1e-07 59.7 42 64.3


User provided reference genes

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