Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 4.5e-48 194.1 89 100.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 6.5e-47 190.3 88 97.7
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 5.1e-44 180.6 88 90.9
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 7.7e-40 166.8 89 84.3
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.7e-39 165.6 89 82.0
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 5.0e-39 164.1 80 88.8
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 5.0e-39 164.1 84 85.7
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 5.0e-39 164.1 84 85.7
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 8.5e-39 163.3 91 80.2
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 8.5e-39 163.3 87 82.8
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.4e-38 162.5 91 80.2
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 1.4e-38 162.5 82 85.4
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.9e-38 162.2 87 81.6
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 4.2e-38 161.0 89 78.7
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 5.5e-38 160.6 90 82.2
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 9.4e-38 159.8 90 82.2
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 1.2e-37 159.5 86 81.4
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 2.1e-37 158.7 94 76.6
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.7e-37 158.3 86 80.2
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.7e-37 158.3 86 80.2
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 2.7e-37 158.3 87 78.2
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 3.6e-37 157.9 87 79.3
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 3.6e-37 157.9 79 86.1
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 3.6e-37 157.9 81 84.0
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 6.1e-37 157.1 89 77.5
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 8.0e-37 156.8 87 79.3
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 8.0e-37 156.8 89 80.9
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 8.0e-37 156.8 82 80.5
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 8.0e-37 156.8 91 78.0
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 1.0e-36 156.4 86 77.9
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 1.8e-36 155.6 86 79.1
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.3e-36 155.2 88 78.4
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 2.3e-36 155.2 77 85.7
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 2.3e-36 155.2 90 78.9
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 3.0e-36 154.8 88 78.4
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 3.9e-36 154.5 88 78.4
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 3.9e-36 154.5 90 78.9
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 5.2e-36 154.1 89 76.4
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 5.2e-36 154.1 90 77.8
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 6.7e-36 153.7 84 79.8
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 6.7e-36 153.7 77 87.0
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 8.8e-36 153.3 90 75.6
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.5e-35 152.5 81 80.2
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 1.5e-35 152.5 89 78.7
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 83 78.3
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 2.0e-35 152.1 83 78.3
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 2.6e-35 151.8 86 75.6
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 2.6e-35 151.8 82 79.3
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 7.4e-35 150.2 76 84.2
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 7.4e-35 150.2 85 77.6
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 7.4e-35 150.2 87 74.7
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 9.7e-35 149.8 80 80.0
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 9.7e-35 149.8 90 75.6
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.3e-34 149.4 84 75.0
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 1.3e-34 149.4 78 79.5
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 1.7e-34 149.1 83 75.9
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 2.2e-34 148.7 90 76.7
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 2.2e-34 148.7 89 75.3
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 2.8e-34 148.3 85 76.5
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 3.7e-34 147.9 86 77.9
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 3.7e-34 147.9 86 77.9
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 3.7e-34 147.9 80 77.5
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 4.8e-34 147.5 87 73.6
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 6.3e-34 147.1 79 78.5
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 8.2e-34 146.7 87 73.6
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.4e-33 146.0 87 73.6
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 1.8e-33 145.6 85 74.1
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 1.8e-33 145.6 87 73.6
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 3.1e-33 144.8 82 75.6
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 3.1e-33 144.8 88 70.5
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 4.1e-33 144.4 82 75.6
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 4.1e-33 144.4 77 79.2
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.6e-32 141.7 87 72.4
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 2.6e-32 141.7 91 71.4
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 1.0e-31 139.8 93 69.9
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 4.2e-30 134.4 93 66.7
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.4e-28 129.4 83 66.3
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 6.7e-28 127.1 132 48.5
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 8.3e-26 120.2 140 46.4
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 4.7e-21 104.4 82 61.0
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 3.0e-20 101.7 76 59.2
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 5.2e-20 100.9 199 33.7
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 5.4e-17 90.9 42 90.5
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 5.4e-17 90.9 43 88.4
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 5.9e-16 87.4 50 82.0
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.7e-15 85.9 41 85.4
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 3.8e-15 84.7 41 87.8
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 1.9e-14 82.4 42 78.6
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 1.8e-12 75.9 48 70.8
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 2.3e-12 75.5 50 68.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 4.0e-12 74.7 44 68.2
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 1.3e-10 69.7 45 71.1
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 2.2e-10 68.9 88 39.8
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 2.2e-10 68.9 32 93.8
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.2e-10 68.9 40 70.0
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 1.1e-09 66.6 79 40.5
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 1.4e-09 66.2 85 41.2
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 1.8e-09 65.9 79 39.2
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 1.8e-09 65.9 83 39.8
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 1.8e-09 65.9 79 40.5
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 1.8e-09 65.9 79 40.5
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 1.8e-09 65.9 79 41.8
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 2.4e-09 65.5 79 40.5
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 4.1e-09 64.7 79 39.2
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 4.1e-09 64.7 80 38.8
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 5.4e-09 64.3 79 38.0
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 5.4e-09 64.3 79 39.2
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.4e-09 64.3 79 39.2
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 7.0e-09 63.9 86 37.2
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 7.0e-09 63.9 79 39.2
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 9.2e-09 63.5 79 38.0
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 1.2e-08 63.2 79 38.0
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.2e-08 63.2 87 37.9
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.2e-08 63.2 87 37.9
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 1.2e-08 63.2 79 39.2
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.6e-08 62.8 86 36.0
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 1.6e-08 62.8 79 39.2
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 2.0e-08 62.4 86 37.2
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 2.0e-08 62.4 86 37.2
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 2.7e-08 62.0 79 36.7
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 2.7e-08 62.0 79 38.0
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 3.5e-08 61.6 87 39.1
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 3.5e-08 61.6 79 38.0
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 3.5e-08 61.6 79 38.0
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 3.5e-08 61.6 79 38.0
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 4.5e-08 61.2 86 34.9
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 4.5e-08 61.2 87 37.9
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 4.5e-08 61.2 87 37.9
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 4.5e-08 61.2 87 36.8
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 4.5e-08 61.2 82 36.6
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 4.5e-08 61.2 82 34.1
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.9e-08 60.8 86 36.0
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 5.9e-08 60.8 88 38.6
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 5.9e-08 60.8 86 36.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 5.9e-08 60.8 85 36.5
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 5.9e-08 60.8 86 36.0
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 5.9e-08 60.8 85 37.6
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 5.9e-08 60.8 86 36.0
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 7.8e-08 60.5 83 36.1
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 7.8e-08 60.5 86 36.0
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.0e-07 60.1 86 36.0
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.0e-07 60.1 82 37.8
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.0e-07 60.1 88 36.4
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.0e-07 60.1 84 35.7
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.0e-07 60.1 86 37.2
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 1.3e-07 59.7 79 35.4
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 1.3e-07 59.7 77 33.8
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 1.3e-07 59.7 79 38.0
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 1.3e-07 59.7 86 36.0
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 1.3e-07 59.7 87 37.9
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 1.7e-07 59.3 88 37.5
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 2.3e-07 58.9 79 36.7
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 2.3e-07 58.9 86 34.9
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 2.3e-07 58.9 79 35.4
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 2.9e-07 58.5 95 36.8
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 3.9e-07 58.2 77 36.4
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 3.9e-07 58.2 87 34.5
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 6.6e-07 57.4 91 34.1
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 8.6e-07 57.0 77 33.8
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.1e-06 56.6 84 35.7
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.1e-06 56.6 84 35.7
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.1e-06 56.6 84 35.7
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.1e-06 56.6 84 35.7
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 1.1e-06 56.6 88 34.1
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 1.1e-06 56.6 88 35.2
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 2.5e-06 55.5 102 31.4
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 2.5e-06 55.5 109 31.2
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 2.5e-06 55.5 83 34.9
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 2.5e-06 55.5 89 33.7
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 7.3e-06 53.9 90 34.4
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 9.5e-06 53.5 88 35.2
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 9.5e-06 53.5 107 28.0
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 9.5e-06 53.5 79 30.4


User provided reference genes

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