Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.7e-156 555.8 257 100.0
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.6e-143 512.7 257 91.8
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 1.2e-141 506.5 258 89.9
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 2.3e-137 492.3 253 87.7
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 3.3e-136 488.4 257 87.5
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 2.2e-135 485.7 261 87.0
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 2.2e-135 485.7 254 85.8
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 3.7e-135 485.0 253 87.4
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 8.2e-135 483.8 254 87.0
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 8.2e-135 483.8 257 86.4
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 8.2e-135 483.8 251 87.6
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 1.1e-134 483.4 257 84.8
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 2.4e-134 482.3 254 87.4
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.5e-133 479.6 250 87.2
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 2.0e-133 479.2 254 86.2
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 2.0e-133 479.2 261 86.2
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 4.5e-133 478.0 251 86.5
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.5e-133 478.0 250 86.8
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 7.7e-133 477.2 250 86.8
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 1.3e-132 476.5 255 85.1
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.8e-132 474.9 253 85.8
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 3.8e-132 474.9 264 82.6
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 5.0e-132 474.6 251 85.3
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 5.0e-132 474.6 259 83.4
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 6.5e-132 474.2 257 84.0
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 1.1e-131 473.4 255 85.1
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 2.5e-131 472.2 257 84.4
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 3.2e-131 471.9 258 84.1
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.2e-131 471.5 251 84.9
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 5.5e-131 471.1 256 83.2
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 9.4e-131 470.3 258 84.1
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.6e-130 469.5 256 83.2
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.1e-130 469.2 251 84.1
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.1e-130 469.2 251 84.5
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 2.1e-130 469.2 267 80.1
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 2.7e-130 468.8 257 82.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 4.7e-130 468.0 254 84.6
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 6.1e-130 467.6 255 82.7
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 7.9e-130 467.2 253 84.6
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 7.9e-130 467.2 256 82.8
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 1.0e-129 466.8 255 83.1
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 1.4e-129 466.5 251 85.3
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.4e-129 466.5 253 84.2
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.9e-129 464.9 256 83.6
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 1.1e-128 463.4 253 83.8
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.6e-128 462.2 255 82.0
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.3e-128 461.8 243 84.8
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 4.4e-128 461.5 237 87.8
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 7.4e-128 460.7 242 86.4
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.7e-127 459.5 253 82.6
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 3.7e-127 458.4 256 81.6
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 5.3e-126 454.5 239 87.0
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 1.2e-125 453.4 251 80.9
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 1.6e-125 453.0 255 81.6
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.0e-125 452.6 249 82.3
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.0e-125 452.6 249 82.3
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 2.6e-125 452.2 245 84.1
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.0e-124 450.3 241 84.6
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.0e-124 450.3 249 81.9
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.2e-124 449.1 254 79.9
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 2.9e-124 448.7 253 81.0
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 3.8e-124 448.4 253 81.0
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 3.8e-124 448.4 253 81.0
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 3.8e-124 448.4 251 82.5
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 5.0e-124 448.0 253 80.2
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 6.5e-124 447.6 253 80.6
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 1.1e-123 446.8 233 85.0
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.5e-123 446.4 253 79.4
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 2.5e-123 445.7 253 81.0
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 5.5e-123 444.5 255 78.0
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 7.2e-123 444.1 253 79.4
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 9.4e-123 443.7 252 81.0
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.2e-122 443.4 253 79.4
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 1.2e-122 443.4 253 81.0
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.1e-122 442.6 253 79.8
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 2.7e-122 442.2 252 79.0
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 1.0e-121 440.3 253 79.4
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 1.4e-121 439.9 252 78.6
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 1.4e-121 439.9 252 78.6
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.4e-121 439.9 251 78.5
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.8e-121 439.5 253 78.7
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.8e-121 439.5 252 78.6
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 3.0e-121 438.7 252 78.2
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 3.0e-121 438.7 254 79.5
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 3.0e-121 438.7 243 80.7
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 3.0e-121 438.7 259 77.2
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 4.0e-121 438.3 251 78.5
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 8.8e-121 437.2 252 78.2
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 8.8e-121 437.2 250 77.6
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.5e-120 436.4 261 75.5
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 2.0e-120 436.0 245 80.8
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.0e-120 436.0 252 76.2
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 2.6e-120 435.6 231 81.8
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 3.3e-120 435.3 245 78.8
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.4e-120 434.9 250 78.0
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 5.7e-120 434.5 252 77.8
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 9.7e-120 433.7 245 78.0
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 4.8e-119 431.4 244 79.5
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.8e-119 431.4 245 77.6
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 4.8e-119 431.4 237 79.3
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.1e-118 430.3 243 78.2
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.1e-118 430.3 234 80.3
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 1.8e-118 429.5 257 76.7
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 2.4e-118 429.1 251 75.7
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.1e-118 428.7 235 81.3
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 5.3e-118 427.9 235 81.3
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 7.0e-118 427.6 229 83.0
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 9.1e-118 427.2 232 81.5
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.6e-117 426.4 252 76.2
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.6e-117 426.4 246 76.4
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 2.0e-117 426.0 244 78.7
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 2.7e-117 425.6 252 76.6
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 4.5e-117 424.9 253 76.7
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 4.5e-117 424.9 254 75.6
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 1.0e-116 423.7 243 77.4
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.3e-116 423.3 245 78.0
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.2e-116 422.5 240 79.2
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 2.2e-116 422.5 236 79.2
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.9e-116 422.2 242 77.7
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 3.8e-116 421.8 242 77.7
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 5.0e-116 421.4 233 80.3
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 5.0e-116 421.4 254 74.0
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 6.5e-116 421.0 249 77.9
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 8.5e-116 420.6 245 76.7
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 1.1e-115 420.2 232 79.3
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.1e-115 420.2 248 75.8
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.9e-115 419.5 237 78.9
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 2.5e-115 419.1 243 77.0
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 4.2e-115 418.3 243 76.5
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 7.2e-115 417.5 253 75.1
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.1e-114 416.0 256 72.7
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 4.7e-114 414.8 228 81.1
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 4.7e-114 414.8 249 75.1
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 8.8e-113 410.6 253 74.3
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 2.6e-112 409.1 226 79.2
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 9.8e-112 407.1 247 72.9
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 4.1e-110 401.7 216 85.2
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 7.7e-109 397.5 212 83.5
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.9e-108 395.6 244 70.9
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 3.8e-108 395.2 241 73.0
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 8.5e-108 394.0 248 71.8
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 2.5e-107 392.5 230 75.7
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.1e-102 377.1 244 69.7
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 4.0e-97 358.6 223 71.3
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 8.9e-97 357.5 252 63.5
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 2.2e-95 352.8 237 65.0
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 4.9e-95 351.7 226 68.1
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 6.4e-95 351.3 255 65.1
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 2.4e-94 349.4 235 64.7
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 3.5e-93 345.5 241 64.7
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 3.9e-92 342.0 245 63.3
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 2.7e-85 319.3 181 84.0
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.3e-84 316.2 253 61.3
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 5.2e-81 305.1 161 83.9
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 4.6e-77 292.0 158 81.6
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 4.0e-65 252.3 177 63.8
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.7e-55 220.3 233 49.8
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 7.1e-54 214.9 218 47.7
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 6.4e-47 191.8 201 51.2
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 2.6e-40 169.9 96 80.2
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 1.3e-31 141.0 116 58.6
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 1.7e-31 140.6 107 63.6
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 9.7e-27 124.8 141 47.5
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 1.0e-12 78.2 51 58.8
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 1.0e-12 78.2 65 56.9
Cfa001406 Carpinus fangiana HOM05D000015 ORTHO05D000270 4.8e-10 69.3 33 93.9


User provided reference genes

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